Curator Dashboard

Software tool used in visual object recognition software research to analyze images for scenes, objects, faces, and other content. A convolutional neural network for large scale image recognition. Weights for the VGG-16 model architecture trained on an image database Imagenet.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Portal for analysis and interpretation of pediatric genomic and clinical data to advance personalized medicine for detection, therapy, and management of childhood cancer and structural birth defects. For patients, researchers, and clinicians to create centralized database of well curated clinical and genetic sequence data from patients with childhood cancer or structural birth defects.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software tool Python based and open source for statistical analysis of TnSeq data. Provides a graphical interface to three different statistical methods for analyzing TnSeq data capable of identifying essential genes in individual datasets as well as comparative analysis between conditions.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software application for science and medicine which offers 3-D Measurement, 3-D Volume Visualization, and 3-D Rendering for any 3-D data. It accepts stacks of registered 2-D images and creates 3-D projections from any viewpoint.

• Data Set
• dkNET
• 8 years ago - submitted by Maryann Martone

Portal of NCATS (the National Center for Advancing Translational Sciences) for drug development information including:US approved drugs, marketed drugs, investigational drugs. Provides manually curated data supplied by the FDA and private companies. Provides drugs marketing and regulatory status, drug ingredient definitions, biological activity and clinical use.

• Resource
• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Web based application to assist researchers with identifying drugs and small molecules that are predicted to maximally influence expression of mammalian gene of interest. Used to identify drugs and small molecules to regulate expression of target genes for research purpose only. Application for ranking drugs to modulate specific gene based on transcriptomic signatures.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software tool with approaching infers network structure by measuring the pairwise associations between the data observed in the individual network nodes. It follows the more general statistical perspective of GRN inference, where no explicit model of the data is built or assumed.

• Resource
• SciCrunch
• 8 years ago - submitted by Vladimir Kuzmanovski

The LINCS website is a source of information for the research community and general public about the LINCS project. This website along with the LINCS Data Portal contains details about the assays, cell types, and perturbagens that are currently part of the library, as well as links to participating sites, data releases from the sites, and software that can be used for analyzing the data.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Sherry Jenkins

Project to create network based understanding of biology by cataloging changes in gene expression and other cellular processes when cells are exposed to genetic and environmental stressors. Program to develop therapies that might restore pathways and networks to their normal states. Has LINCS Data Coordination and Integration Center and six Data and Signature Generation Centers: Drug Toxicity Signature Generation Center, HMS LINCS Center, LINCS Center for Transcriptomics, LINCS Proteomic Characterization Center for Signaling and Epigenetics, MEP LINCS Center, and NeuroLINCS Center.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Sherry Jenkins

Data and code (Python) related to research paper: V. Javier Traver, Filiberto Pla, Marta Miquel, Maria Carbo-Gas, Isis Gil-Miravet, Julian Guarque-Chabrera "Cocaine-induced preference conditioning: a machine vision perspective".

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tool for systematic review. A not-for-profit service working in partnership with Cochrane library to improve the production and use of systematic reviews.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software package written in Java for geometric morphometric analysis for two- and three-dimensional landmark data. Offers user-friendly environment for standard multivariate analyses such as principal components, discriminant analysis and multivariate regression as well as specialized applications including phylogenetics, quantitative genetics and analyses of modularity in shape data.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software package for performing all stages of geometric morphometric shape analysis of landmark points and curves in 2-and-3-dimensions as well as 3D surfaces in the R statistical computing environment.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software for cephalometric analysis. Customizable. Allows rendering, viewing and measuring of 3D data from CT scanners. Used in orthodontic departments for analysis of the dental and skeletal relationships of a human skull.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Statistical analyses

• RRID-Legacy
• 8 years ago - submitted by Bo-Chul SHIN

Software package for statistics. Used to analyze and visualize data. Extensions can be used, Python and R programming language code, to integrate with open source software. Available for Windows and Mac operating systems.Versions that were produced by SPSS Inc. before the IBM acquisition (Versions 18 and earlier) would be given origin or publisher of SPSS Inc. in Chicago. Versions that were released after the acquisition would be given origin or publisher of IBM Corp. in Armonk, NY.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Commercially available services for biomedical research. Includes the quantitative determination of the methylation level of selected epigenetic markers, designing and validation of primers and conditions for the multiplication of selected markers by PCR and determination of their methylation level by the pyrosequencing method. Service electro-optical laboratory equipment and offers specialized repair services: PCR thermal cyclers, Laboratory power supplies, ELISA plate readers.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Core facility responsible for custom adeno-associated virus (AAV) and lentivirus production available through Canadian Neurophotonics Platform. Services include design, cloning and production of molecular constructions in order to produce plasmid expression vectors or to generate transgenic animals and design, including advice and assistance for choice of suitable vectors required by investigators.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software application as a collection of genomic pipelines used for raw fastq read data of bisulfite experiments, RNAseq samples, single cell dropseq analysis, reads from ChIPseq experiments, analysis of sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data.

• Resource
• SciCrunch
• 8 years ago - submitted by Ricardo Wurmus

Software tool to calculate the activity coefficient of an ion in solution by Lenntech B.V. Determines the ionic strength of solution by using the concentration of ions present in drinking water.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous