Curator Dashboard

Software tool to store the predicted and the experimentally validated microRNA (miRNA)-target interaction pairs. Predictions within the complete sequence of genes of human, mouse, and rat genomes. Integrates a comparative platform of miRNA-binding sites resulting from ten different prediction datasets.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software application as an open source Pyton library to search and predict miRNA targets.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tool as a pattern based algorithm for detecting microRNA binding sites and their corresponding microRNA and mRNA complexes. Allows interactive exploration and visualization of miRNA target predictions. Permits link-out to external expression repositories and databases.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software application as an integrated web resource of marmoset biological data. Used to find genomic, expression and alternative splicing data to facilitate the study of animal model for neuropsychiatric and social behavior research and to support biological analyses such as functional (ontology) enrichment analysis and protein-protein-network.

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• dkNET
• 8 years ago - submitted by Maryann Martone

Web server for predicting unknown drug-target interaction networks from various types of biological data in the framework of supervised network inference.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software tool for protein secondary structure prediction from the amino acid sequence by the JNet algorithm. Makes also predictions on Solvent Accessibility and Coiled-coil regions.

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• SciCrunch
• 8 years ago - submitted by Richard Posert

Software package and a platform for the processing of electron micrographs in structural biology. Supports different image file formats used in electron microscopy (including MRC, SPIDER, IMAGIC, SUPRIM, and PIF)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 8 years ago - submitted by Richard Posert

Software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them.

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• SciCrunch
• 8 years ago - submitted by Richard Posert

Software integrated platform used for obtaining 3D structural information from single particle cryo-EM data. Enables automated, high quality and high-throughput structure discovery of proteins, viruses and molecular complexes for research and drug discovery.

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• SciCrunch
• 8 years ago - submitted by Richard Posert

Software tool as a Graphics Processing Units (GPU) accelerated computer program for real-time contrast transfer function (CTF) determination and correction. Used for a near-atomic resolution cryo electron microscopy (cryoEM) reconstruction to maximize the cross-correlation of a simulated CTF with the logarithmic amplitude spectra (LAS) of observed micrographs after background subtraction., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 8 years ago - submitted by Richard Posert

Software tool for anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Used to describe the sample motion as a local deformation that varies smoothly throughout the exposure. A program running on Linux.

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• SciCrunch
• 8 years ago - submitted by Richard Posert

Software suite for Alternative Splicing Events (ASEs) analysis from transcriptome sequencing data in any transcriptome. Used for identification, annotation and visualization. Written in Perl and suitable to run only in UNIX-like systems.

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• RRID-Legacy
• 8 years ago - submitted by Maryann Martone

Software platform to perform image processing, analysis, and data reporting for microscope-based research and quality inspection.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool for performing tests for deviation from Hardy-Weinberg equilibrium and tests for association. Used in population-based genetic association studies to identify susceptibility genes for complex diseases.

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• NIF
• 8 years ago - submitted by Maryann Martone

Vibrating blade microtome for sectioning by Leica Biosystems. Used in neurophysiology, neuropathology, experimental pathology, botany (roots and plants) and industry (foams)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool used in visual object recognition software research to analyze images for scenes, objects, faces, and other content. A convolutional neural network for large scale image recognition. Weights for the VGG-16 model architecture trained on an image database Imagenet.

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• RRID-Legacy
• 8 years ago - by Anonymous

Portal for analysis and interpretation of pediatric genomic and clinical data to advance personalized medicine for detection, therapy, and management of childhood cancer and structural birth defects. For patients, researchers, and clinicians to create centralized database of well curated clinical and genetic sequence data from patients with childhood cancer or structural birth defects.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software tool Python based and open source for statistical analysis of TnSeq data. Provides a graphical interface to three different statistical methods for analyzing TnSeq data capable of identifying essential genes in individual datasets as well as comparative analysis between conditions.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software application for science and medicine which offers 3-D Measurement, 3-D Volume Visualization, and 3-D Rendering for any 3-D data. It accepts stacks of registered 2-D images and creates 3-D projections from any viewpoint.

• Data Set
• dkNET
• 8 years ago - submitted by Maryann Martone

Portal of NCATS (the National Center for Advancing Translational Sciences) for drug development information including:US approved drugs, marketed drugs, investigational drugs. Provides manually curated data supplied by the FDA and private companies. Provides drugs marketing and regulatory status, drug ingredient definitions, biological activity and clinical use.

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• SciCrunch
• 8 years ago - submitted by Anita Bandrowski