Curator Dashboard

Software as an interactive web tool to compare two or more groups of samples in a Gene Expression Omnibus (GEO) series regardless of data type and quality. Used to identify genes that are differentially expressed across experimental conditions. Results are presented as a table of genes ordered by significance.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package available through Fiji to image large biological specimen at high resolution. Comes with 2 different plugins to reconstruct big images/stacks : Pairwise Stitching to stitch two 2d-5d images, and Grid/Collection Stitching to stitch an arbitrary amount of 2d-5d input images.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package for diffusion imaging analysis and visualization. Module of Vistasoft for processing diffusion weighted data and measuring and visualizing fractional anisotropy, mean diffusivity, axial and radial diffusivity, RGB fiber direction maps and analysis of MRI data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for reconstruction, visualization and analysis of neuronal processes .Fiji's framework for semi-automated tracing of neurons and other tube-like structures (blood vessels) through 3D image stacks.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Python library for materials analysis codes. Defines core object representations for structures and molecules.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for phonetics research to analyse, synthesize, and manipulate speech.

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• SciCrunch
• 8 years ago - submitted by Robert Oostenveld

Software tool implemented in R S4 as an analytic pipeline for processing single-cell RNA-seq data from a whole organ or sorted cells. Used for Single Cell RNA-Seq profiling analysis.

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• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool for assay data analysis.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool for comparing lists with Venn's diagrams.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software package for advanced image processing, analysis, segmentation and visualization of multi-dimensional (2D-4D) light and electron microscopy datasets.

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• RRID-Legacy
• 8 years ago - by Anonymous

Portal for a multi-cohort study focused on sleep-disordered breathing and cardiovascular outcomes implemented by the National Heart Lung and Blood Institute. Recorded signals are: EEG, ECG, EOG, SaO2, HR, EOG, EMG, respiratory inductance plethysmography, respiration (thermistor), position, light.

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• RRID-Legacy
• 8 years ago - submitted by Sara Mariani

Software analysis tools for electrophysiological somatosensory cortex databank. Allows to estimate the information content of spiking in single neuron resolution. It accompanies the open source intracellular recording database by Lantyer and colleagues.

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• RRID-Legacy
• 8 years ago - submitted by Tansu Celikel

Software tool as a unified analytics engine for large scale data processing. An open source distributed general purpose cluster computing framework.

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• RRID-Legacy
• 8 years ago - submitted by Boaz Mohar

Software package for the analysis of image and time series data in Python. Provides data structures and algorithms for loading, processing, and analyzing these data. Runs locally or against a Spark cluster with an identical API.

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• RRID-Legacy
• 8 years ago - submitted by Boaz Mohar

Microscope software platform which integrates Leica automated microscopes and digital cameras and provides one common user interface.

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• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Software as a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data (as well as of even/odd data, i.e. the discrete cosine/sine transforms or DCT/DST).

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• SciCrunch
• 8 years ago - by Anonymous

Portal for analysis and interpretation of pediatric genomic and clinical data to advance personalized medicine for detection, therapy, and management of childhood cancer and structural birth defects. For patients, researchers, and clinicians to create centralized database of well curated clinical and genetic sequence data from patients with childhood cancer or structural birth defects.

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• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

This resource has been replaced by GenTaR. Software tool for the planning of all IMPC mouse production. Allows IMPC production centers to record the progress of mouse production, cre-excision and to summarise the progress of phenotype data collection and transfer to the IMPC DCC. Stores all the mutation molecular structures made for the IKMC, catalogs of all IKMC products.

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• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Database for phenotype genotype associations for humans. Used by clinical researchers to store standardized phenotypic information, diagnosis, and pedigree data and then run analyses on VCF files from individuals, families or cohorts with suspected Mendelian disease.

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• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool to standardize and facilitate connectivity studies through a graphical user interface and validated preset parameters.

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• NIF
• 8 years ago - submitted by Matt Travers