Curator Dashboard

Platform to facilitate prediction, analysis, and hypothesis generation from genome wide perturbation studies like those designed with RNAi and CRISPR technologies.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Hadoop based tool for massive comparative metagenomics analysis. Compute the similarity between metagenomic samples.

• Resource
• SciCrunch
• 8 years ago - submitted by ILLYOUNG CHOI

Software tool to identify the most reliable differences between any two groups . Used to identify differentially expressed genes between two groups.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

MTA open version of the material transfer agreement for biological samples from the BioBricks Foundation. Supports the transfer of material between researchers at all types of institutions, including academic, industry, government and community laboratories.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Cloud based standardised European e-infrastructure for metabolomics and phenomics data processing, analysis and information mining on public or private cloud providers. Used for large scale computing for medical metabolomics.

• Organization
• SciCrunch
• 8 years ago - submitted by Kristian Peters

Community based, biologist friendly web platform for creating and meta analyzing annotated gene expression data compendia., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software application for data mining and visualization. Used for analyzes of large FLOWJO data sets from polychromatic flow cytometry and organizing the normalized data graphically.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Web application for integrated analysis and interactive visualization of RNA interference (RNAi) screening data.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Histology and light microscopy facility for paraffin and frozen blocks and all aspects of sample preparation, fixation, embedding, sectioning, staining, and imaging. Consultations, technical assistance and training are also provided. Standard operating procedures compliant with good laboratory and clinical processes are followed for all procedures. Services include cryosectioning, whole slide imaging, hematoxylin and eosin staining, immunfluorescence, and tissue microarrays..

• Resource
• RRID-Legacy
• 8 years ago - submitted by Martha Campbell-Thompson

Collection of manually curated data regarding structure and antimicrobial activity of natural and synthetic peptides. Provides the information and analytical resources to develop antimicrobial compounds with the high therapeutic index.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Collection of curated papillomavirus genomic sequences, accompanied by web-based sequence analysis tools. Database and web applications support the storage, annotation, analysis, and exchange of information.

• Resource
• SciCrunch
• 8 years ago - submitted by Ko-Wei Lin

National Institute of Allergy and Infectious Diseases is a leading research institution to understand, treat, and prevent infectious, immunologic, and allergic diseases.

• Organization
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Office of Cyber Infrastructure and Computational Biology of NIAID.

• Organization
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Analysis environment and collection of individual software tools to process raw shotgun metagenome or metatranscriptome sequencing data for quantitative microbial community profiling. Used for a metaomics data analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Cloud based platform for simplified, standardized and reproducible microbiome data analysis. Allows users to process microbiome datasets through pipelines of existing software tools.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Web based open access platform for global drug resistant tuberculosis data sharing and analysis. The NIAID TB Portals program and consortium of clinicians and scientists from countries with a heavy burden of TB, especially drug resistant TB, to collect TB data.

• Resource
• SciCrunch
• 8 years ago - submitted by Ko-Wei Lin

Resource of chemokines and receptors with detailed information including taxonomy, nomenclature, structure, physiological function, tissue information, and phenotype, collected from IUPHAR/BPS, UniGene, and UniProt public databases.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software as graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics.

• Resource
• SciCrunch
• 8 years ago - submitted by Daniel Jacob

Software program for preprocessing resting state functional magnetic resonance imaging (rsfMRI) measurements and calculating region of interest based whole brain functional connectivity.

• Resource
• SciCrunch
• 8 years ago - submitted by Pál Vakli

Software program to implement transfer learning for a connectome convolutional neural network trained to classify functional connectomes using Tensorflow.

• Resource
• SciCrunch
• 8 years ago - submitted by Pál Vakli