Curator Dashboard

ENISI MSM is a high-resolution model of the stomach for simulating the mucosal immune responses to Helicobacter pylori infection.

• Resource
• SciCrunch
• 8 years ago - submitted by Josep Bassaganya-Riera

Software as a cross platform gene expression visualization tool. Extensible viewer for microarray data in the PCL or CDT format. Interactive display of clustered gene expression data. Java application for visualizing large data matrices. It can load a dataset, cluster it, browse it, customize its appearance and export it into a figure.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool to identify metagenomic sequences of phages, chromosomes or plasmids. Used for identifying phages and plasmids from metagenomic fragments using deep learning., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 8 years ago - submitted by Zhencheng Fang

This was a test to figure out how to add resources in SciCrunch.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Josep Bassaganya-Riera

kit for apoptosis

• Resource
• RRID-Legacy
• 8 years ago - submitted by Bo-Chul SHIN

This ELISA kit is used for quantitative protein detection, establishing normal range, validation of antibody array results, strip plates and additional reagents allow for use in multiple experiments.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Ran Zhang

Software Python package for neuroimaging data. Framework to design and train neural network architectures. Used in medical imaging community to ensure consistent performance of networks across variable users, institutions, and scanners.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Andrew Beers

A deep learning python package for medical imaging data. Focused on validated tools you can use today with a minimum of friction. Created by the Quantitative Translational Imaging Lab at the Martinos Center (Harvard-MIT Program in Health, Sciences, and Technology / Massachussets General Hospital).

• Resource
• RRID-Legacy
• 8 years ago - submitted by Andrew Beers

Web tool for gene expression profiling, meta-analysis and systems understanding. Used for statistical, visual and network-based meta-analysis of gene expression data.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software application for matching a single candidate protein sequence and its modifications against a set of mass spectrometric observations. Used to analyze top-down mass spectrometry data.

• Resource
• SciCrunch
• 8 years ago - submitted by Paul Thomas

Organization dedicated to analysis of protein molecules by mass spectrometry, with a focus on intact protein measurements. Biomedical projects originated from clinical and basic research programs that utilize both targeted and untargeted analyses. Used for the development of new technology, training and dissemination of proteomics methods to laboratories and scientists.

• Organization
• SciCrunch
• 8 years ago - submitted by Paul Thomas

IHC,WB

• Resource
• SciCrunch
• 8 years ago - submitted by Huizhu Liu

Molecular computing based on XNA-built alphabets.

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• RRID-Legacy
• 8 years ago - submitted by Oleg Gradov

Krukowskikh, V., & Gradov, O. (2014). Praxeometric analysis of the selfish genetic machinery using W. Gasparski criteria for extended phenotypic expressivity. Life of Genomes - 2014. https://doi.org/10.13140/2.1.3298.9123

• Resource
• RRID-Legacy
• 8 years ago - submitted by Oleg Gradov

Gradov's Initiative Scientific Instrumentation Group, INEPCP [before 2016] Biophysical Channelomics Subunit: https://scientificinstrumentation.wordpress.com/our-projects/instrumentation-for-channelomics/

• Resource
• NIF
• 8 years ago - submitted by Oleg Gradov

Acoustic DSP-assisted imagie-based footprinting of neural tissues.

• Resource
• NIF
• 8 years ago - submitted by Oleg Gradov

Software tool for windowed adaptive trimming for fastq files using quality. Supports quality values like Illumina, Solexa, and Sanger. Takes the quality values and slides a window across them whose length is 0.1 times the length of the read.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software as R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding. Used for high-dimentional data visualisation.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool to analyze Flow or mass cytometry data using a Self-Organizing Map. Used to obtain an overview of how all markers are behaving on all cells, and to detect subsets that might be missed otherwise.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software for burst analysis of freely diffusing single-molecule Förster Resonance Energy Transfer (smFRET) experiments to study cellular processes at the molecular scale. Used for single and multi-spot single-molecule FRET (smFRET) data.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth