Curator Dashboard

Consortium to coordinate epigenome mapping and characterization worldwide to avoid redundant research effort, to implement high data quality standards, to coordinate data storage, management and analysis and to provide free access to the high resolution reference human epigenome maps for normal and disease cell types to the research community. Promotes data sharing. You may view, search and download the data already released by the different IHEC associated projects via the IHEC Data Portal.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Public university in Hangzhou, the capital of Zhejiang Province, China. It is a comprehensive university with an excellence in teacher training and professional development.

• Organization
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Data collected from subjects scanned 3 times (V1, V2, V3), with V1 and V2 on a scanner, V3 on another scanner in another site. Resting state blood oxygenation level dependent functional MRI (BOLD fMRI), pseudo continuous arterial spin labeling (pCASL), and high resolution 3D T1 imaging were performed under eyes open (EO) and eyes closed (EC) conditions.

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• NIF
• 8 years ago - submitted by Matt Travers

Test

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software library to help with the conversion between imaging research formats and the standard DICOM representation for image analysis results. Used to implement conversion of the data stored in commonly used research formats into the standard DICOM representation. Available as a precompiled binary package for every major operating system, as a Docker image, and as an extension to 3D Slicer.

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• RRID-Legacy
• 8 years ago - submitted by Andrey Fedorov

Test

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Docker image that is used to process all of the data present in the Digital Expression Explorer 2 dataset. It can be freely used by anyone to process data on NCBI SRA or process their own RNA-seq fastq files. Used for bulk reprocessing of public RNA-seq data from SRA. The pipeline tallies the reads assigned to each gene or transcript.

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• SciCrunch
• 8 years ago - submitted by Mark Ziemann

GitHub repository of the Digital Expression Explorer 2 resource. It contains information related to the pipeline, docker image, backend analysis, webserver, and R package getDEE2.

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• SciCrunch
• 8 years ago - submitted by Mark Ziemann

Software tool as a repository of uniformly processed RNA-seq data mined from public data obtained from NCBI Short Read Archive . DEE2 consists of three parts: Webserver where end-users can search for and obtain data-sets of interest, Pipeline that can download and process SRA data as well as users own fastq files, Back-end that collects, filters and organises data provided by contributing worker nodes.

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• SciCrunch
• 8 years ago - submitted by Mark Ziemann

Equipment with product number MED VFC SCT M supplied by Med Associates. Fear conditioning package eliminates the need for bright visible light, visible light can be used within a session as a cue without impacting the video recording, real time video recordings allows software to distinguish between subtle movements such as whisker twitch or tail flick, as well as freezing behavior.

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• RRID-Legacy
• 8 years ago - by Anonymous

A test request from the NITRC website. Did you get it?

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• NIF
• 8 years ago - by Anonymous

Web tool to identify putative transcription factor binding sites (TFBS) in DNA sequences from a species or groups of species of interest. Used for detection of known transcription regulatory elements using species-tailored searches.

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• RRID-Legacy
• 8 years ago - by Anonymous

Research project to understand the principles underlying nuclear organization in space and time, the role nuclear organization plays in gene expression and cellular function, and how changes in nuclear organization affect normal development and diseases. Portal provides free access to datasets, software packages, and protocols to advance biomedical research of nuclear architecture. Aims to develop and apply approaches to map the structure and dynamics of the human and mouse genomes.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Program to improve understanding of properties and functions of proteins that are currently unannotated within three most commonly drug protein families: targeted G-protein coupled receptors, ion channels, and protein kinases. Includes Data and Resource Generating Centers (DRGC), Knowledge Management Center (KMC), and Resource Dissemination and Outreach Center (RDOC).

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Research consortium from many different fields to plan, perform and analyze the studies that are needed to help researchers conduct future prevention and intervention for Lower Urinary Tract Symptoms (LUTS) in women.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Project to facilitate research on single cells within tissues by supporting data generation and technology development to explore the relationship between cellular organization and function, as well as variability in normal tissue organization at the level of individual cells. Framework for functional mapping the human body with cellular resolution.Designed to support diverse spatial and non-spatial omics and imaging data types and to integrate with a wide range of analysis workflows.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

International project to analyze mouse and human hematopoiesis, and provide a tractable system with clear clinical significance and importance to NIDDK. Collection of information from the flood of epigenomic data on hematopoietic cells as catalogs of validated regulatory modules, quantitative models for gene regulation, and a guide for translation of research insights from mouse to human.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Project to ethically obtain and evaluate human kidney biopsies from participants with Acute Kidney Injury (AKI) or Chronic Kidney Disease (CKD), create a kidney tissue atlas, define disease subgroups, and identify critical cells, pathways, and targets for novel therapies. Used to develop the next generation of software tools to visualize and understand the various components of kidney diseases and to optimize data collection. Multi site collaboration comprised of patients, clinicians, and investigators from across the United States.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software tool as clustering method designed for high dimensional single cell data. Algorithmically defines phenotypes in high dimensional single cell data. Used for large scale analysis of single cell heterogeneity.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for simulating the mucosal immune responses to Helicobacter pylori infection in stomach.

• Resource
• SciCrunch
• 8 years ago - submitted by Josep Bassaganya-Riera