Curator Dashboard

Core provides technology for functional proteomics studies and centralized, standardized and quality controlled services locally and globally.

• Resource
• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Software package for eye tracking studies by New Bio Technology Ltd. Used for designing eye movement studies and recording, analyzing, visualizing data of eye tracking results.

• Data Set
• dkNET
• 8 years ago - submitted by Maryann Martone

Instrument for nanoparticle tracking analysis. A semi-automated method for the characterization of extracellular vesicles with associated analysis software by ParticleMetrix GmbH.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tool to assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes by using a broader set of marker genes specific to the position of a genome within a reference genome tree and information about the collocation of these genes.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Web tool to identify the genotype of a viral sequence. A window is slid along the query sequence and each window is compared by BLAST to each of the reference sequences for a particular virus.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool that helps taxonomists find closest database neighbors of submitted query sequences by generating a phylogenetic tree from BLAST results.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool to search for open reading frames (ORFs) in the DNA sequence. The program returns the range of each ORF, along with its protein translation. Used to search newly sequenced DNA for potential protein encoding segments, verify predicted protein. Limited to the subrange of the query sequence up to 50 kb long.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Web tool for analysis of pairwise identity distribution within viral families. Used for virus sequence-based classification. Data in the system are updated every day to reflect changes in virus taxonomy and additions of new virus sequences to the public database.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool as a program within the standalone BLAST package used to cluster either protein or nucleotide sequences. Used to make non redundant sequence sets.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Web portal for global query cross database search and retrieval system that provides access to all databases simultaneously with a single query string and user interface. Retrieves nucleotide and protein sequence data, gene centered and genomic mapping information, 3D structures, and references. Covers databases including protein sequence data from PIR-International, PRF, Swiss-Prot, and PDB and nucleotide sequence data from GenBank that includes information from EMBL and DDBJ.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Interactive database of gene expression and diabetes related clinical phenotypes. Allows to search gene expression in tissues as a function of obesity, strain, and age, in a mouse.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software tool for comparing EST profiles in order to identify genes with significantly different expression levels.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Project for assemblies of incomplete genomes or incomplete chromosomes of prokaryotes or eukaryotes that are being sequenced by a whole genome shotgun strategy. WGS projects may be annotated, but annotation is not required. The nucleotide and protein data from all WGS projects go into the BLAST database.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool as a command-line program that automates the creation of sequence records for submission to GenBank. Records need no additional manual editing before submission.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for a flow cytometry data analysis for Microsoft Windows enviroment developed by CyFlo Ltd. Has analysis capabilities, such as dot plot, histogram and statistics.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software program for loading numbers of genome records. Allows the retrieval of a large number of nucleotide sequences or protein sequences, in a batch mode, by importing a file containing a list of the desired GI or accession numbers.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Parser for Schrodinger Maestro files. This format is used for computational modeling, and stores molecules with 2D or 3D coordinates and detailed atom and bond information.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Chemical, protein dye for proliferation assays by FACS measurements overtime. The dye fluorescence intensity decreases to the half upon every cell division

• Resource
• RRID-Legacy
• 8 years ago - submitted by Lucia Torres Fernandez

Chemical

• Resource
• RRID-Legacy
• 8 years ago - submitted by Lucia Torres Fernandez

PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations. Please, use the form below to submit your query.

• Data Set
• dkNET
• 8 years ago - submitted by Maryann Martone