Curator Dashboard

Interactive web platform for anyone to explore, search, filter and visualize the single neuron reconstructions.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software imaging platform to generate datasets of whole mouse brains imaged at submicron resolution that allow reconstructions of complete axonal arbors of individual neurons across the entire mouse brain.

• Resource
• NIF
• 8 years ago - submitted by Maryann Martone

Platform for analyzing and sharing neuroimaging data from human brain imaging research studies. Brain Imaging Data Structure ( BIDS) compliant database. Formerly known as OpenfMRI.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Python implementation of the Loom file format to store and organize very large omics datasets, consisting of a main matrix, optional additional layers, a variable number of row and column annotations and sparse graph objects. Used to store single-cell gene expression data. Official Python library (API) used to create, read, and manipulate .loom files, supporting out-of-memory operations to handle datasets larger than RAM.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software for rapid and sensitive classification of metagenomic sequences. Used for the classification of DNA sequences from microbial samples and analysis of large metagenomics data sets on conventional desktop computers.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Platform for quantitative and qualitative proteomics research for Waters Corporation proteomics systems.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 18th,2023. Software package for genome analysis. Used for analysis of next generation genomic data in cancer.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package for copy number estimation from tumor genome sequencing data.Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for identifying, understanding, and correcting technical biases on the sex chromosomes in next generation sequencing data.

• Resource
• SciCrunch
• 8 years ago - submitted by Timothy Webster

β-Actin is one of six different actin isoforms that have been identified. The actin molecules found in cells of various species and tissues tend to be very similar in their immunological and physical properties. Therefore, antibodies against β-Actin are useful as loading controls for Western Blotting. This product is Mouse IgG1, using in Western blot. Its target protein is Full-length β-Actin protein of human.

• Resource
• SciCrunch
• 8 years ago - submitted by Sun Xiaodong

Platform as a web-based interactive environment to automatically identify, explore and visualize homology and functional annotations for assembled transcripts.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Nicolas Tchitchek

Software as an R-based visual framework for analysis of sequencing datasets. Provides a framework for integrative and interactive analyses.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tools for compound-centric data mining and navigation. Used to identify compounds in overlapping and co-eluting peaks with feature extraction and correlation algorithms for chromatographic separation. Used for separating true signals from noise.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool developed for Statistical Parametric Mapping (SPM) that computes slicewise scan by scan difference and standard deviations. Used to examine quality of image timeseries.

• Data Set
• dkNET
• 8 years ago - submitted by Maryann Martone

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 18,2023. Software tool for general particle picking in the single-particle processing of unknown macromolecules. Reference free particle picker with ability to sort particles based on size or it can be used to bootstrap the creation of templates or training datasets for other particle pickers. Used to facilitate particle selection in single particle electron microscopy., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for multi level analysis of applications optimized for ImageXpress instruments. High-content image analysis software featuring time lapse analysis. Used for 2D and 3D imaging.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool to identify pockets on protein surface to predict ligand-binding sites.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software assembler and analysis tool for whole-genome short-gun sequencing for Illumina reads. Provides tools for error correction, sequence-to-read alignment and comparison between read sets. Used for large genomes.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software toolbox for MATLAB for the descriptive and inferential statistical analysis of directional data.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Diego Lozano

Electrophysiology of NR2B containing NMDA receptors in mouse hippocampus.

• Organization
• NIF
• 8 years ago - submitted by John Sullivan