Curator Dashboard

Software for Macromolecular X-Ray Crystallography to produce and support an integrated suite of programs that allows researchers to determine macromolecular structures. Used for determination and analysis of protein structure.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for working with data frame like objects, both in memory and out of memory. It is a grammar of data manipulation, providing a consistent set of verbs that help you solve the most common data manipulation challenges: mutate, select, filer, summerise, arrange.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool as a framework for modeling the sequences of short sequence motifs based on the maximum entropy principle (MEP). Used for sequence motifs such as those involved in RNA splicing.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package to detect and quantify local splicing variations (LSV) from RNA-Seq data. Used to automatically detect and downweight outliers in RNA-Seq datasets with replicates for differential splicing (SD) analysis.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Web server for analysis of high-resolution sequencing data. It can be used with all variants of CLIP,as well as with methods that interrogate RNA or DNA methylation, RNA processing, RNA structure or protein-DNA interactions.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Test

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Electron microscope by Carl Zeiss AG which combines flexibility and ease of use of new control electronics, Windows® based user interface and a vacuum system.

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• RRID-Legacy
• 8 years ago - by Anonymous

Instrument provides acquisition of up to 12 parameters with optical design for enhanced sensitivity for multicolor assays. With customized forward scatter, to achieve accurate size measurement, and optimized electronics for high resolution and fast, accurate processing for researchers needs.

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• RRID-Legacy
• 8 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. BioRevo microscope BZ II viewer software, discontinued product, software for the BZ 9000 Fluorescence Microscope, no download available.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool as an integrated Kaluza software for Gallios flow cytometer acquisiton software to read Gallios protocols and to utilize eight times higher event limit. Powers through datasets containing multiple colors, plots and events.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software to study analysis of an RNA-Seq experiment using the Rsubread and edgeR packages. The workflow starts from read alignment and continues on to data exploration, to differential expression and, finally, to pathway analysis. The analysis includes plots, GO and KEGG analyses, and the analysis of a expression signature as generated by a prior experiment.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

SoftwareR package from CRAN for statistical modeling. Includes growth curve comparisons, limiting dilution analysis (aka ELDA), mixed linear models, heteroscedastic regression, inverse-Gaussian probability calculations, Gauss quadrature and a secure convergence algorithm for nonlinear models. Includes advanced generalized linear model functions that implement secure convergence, dispersion modeling and Tweedie power-law families.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool to provide color schemes for maps and other graphics. R package to create colorful graphs with pre-made color palettes that visualize data.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software package which brings to R color scales. Created for the Python matplotlib library.

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• RRID-Legacy
• 8 years ago - by Anonymous

Instrument for cell sorting by BD Biosciences where positive air pressure forces sample cell through an optically gel-coupled cuvette . Hydrodynamic focusing guides particles in a single-file stream through the cuvette, where laser light intercepts the stream at the sample interrogation point.Fluorescence activated cell sorting instrument. Flow cytometer as high speed fixed alignment benchtop cell sorter. Enables multicolor analysis of up to 13 fluorescent markers and two scatter parameters at time.

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• RRID-Legacy
• 8 years ago - by Anonymous

Leica EM UC7 Ultramicrotome equipped with the Leica EM FC7 provides advanced sectioning capabilities for both room temperature and cryogenic applications. The system enables preparation of ultra-thin and semi-thin sections suitable for electron microscopy, light microscopy, and atomic force microscopy, ensuring high precision and reproducibility across diverse research workflows. Instrument for cutting specimens at room and low temperature. Used to produce both semi- and ultra-thin sections as well as smooth surfaces of biological samples .

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• RRID-Legacy
• 8 years ago - by Anonymous

Software R package from CRAN as a modular leaf ordering methods for dendrogram nodes. Used as sorting methods to improve readability and interpretability of tree structure. Used for comparison of different distance measures or linkage types, identification of tight clusters and outliers, and for coupled heatmap visualization.

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• RRID-Legacy
• 8 years ago - by Anonymous

R package from CRAN to extract and visualize the results of multivariate data analysis.

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• RRID-Legacy
• 8 years ago - by Anonymous

Web based neuroscience application for analyzing task-related functional networks over time and frequency. Interactive visualization tool for exploring functional brain connectivity.

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• RRID-Legacy
• 8 years ago - by Anonymous

WB

• Resource
• SciCrunch
• 8 years ago - submitted by Xiang Li