Curator Dashboard

Software tool for correcting common structural problems and creating reliable, all atom protein models.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool for all purpose molecular modeling environment. Maestro is the portal to all of Schrödinger's computational technology. Helps researchers organize and analyze data.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software package for molecular modeling. Computes free energy changes using free energy perturbation method. Used to examine molecular conformations, molecular motion, and intermolecular interactions, such as those in a ligand-receptor complex.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool to correct and optimize the ligands by generating different protonation states, stereochemistry, tautomers, and ring conformations. Used to generate accurate, energy minimized 3D molecular structures.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software program for pKa prediction and protonation state generation for drug like molecules.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Commercial comprehensive cheminformatics computing environment. Used in discovery of novel therapeutic agents.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software Project Management (SPM) tools which contain a collection of functions that can be used at different stage of a standard massive univariate fMRI data analysis. Used to improve mass univariate analysis.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Maarten Schrooten

Software for workflow management system for de novo genome assembly of DNA sequence data.Designed to exploit high performance computing environments, such as clusters and shared memory systems.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Software that generates, analyses and compares k-mer spectra produced from sequence files. Used to quality control NGS datasets and genome assemblies.

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• SciCrunch
• 8 years ago - by Anonymous

Research core facility for advanced immunology studies including multiplex tissue and spatial analysis, high-parametric cytometry, single-cell sequencing, experimental design, sample processing, data acquisition and processing, data analysis and management.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tool to detect known and novel genes associated with disease traits and provide insights into the mechanism of these associations. Used to test the molecular mechanisms through which genetic variation affects phenotype.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software framework for image processing to obtain 3D models of macromolecular complexes using Electron Microscopy. Open-source project for integration, reproducibility and validation in 3D electron microscopy. It integrates several software packages to execute workflows combining different software tools, while taking care of formats and conversions. Electron Microscopy (3DEM). waiting for pdf from Joe

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Collection of structured and manually curated data of current therapeutic interventions in aging and age-related disease. Describes compounds and mechanisms using multiple chemical and biological databases.

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• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Software tool for a general purpose crystallographic structure refinement within the PHENIX package. Serves as a critical component in automated model building, final structure refinement, structure validation and deposition to the wwPDB.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package for advanced peptide and protein identification by tandem mass spectrometry. Allows to define unlimited number of variable modification type and allows the user to set a separate limit on the number of occurrences of each modification type.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package for processing and analysis of EM images. Appion is integrated with Leginon data acquisition but can also be used stand-alone after uploading images (either digital or scanned micrographs) or particle stacks using a set of provided tools.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for high-resolution refinement of 3D reconstructions from cryo-EM images of single particles. Used to process electron microscope images of single molecules and complexes to obtain reconstructions at the highest possible resolution.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for finding CTFs of electron micrographs. Program used for the estimation of objective lens defocus parameters from transmission electron micrographs. The program CTFFIND3 is an updated version of the program CTFFIND2. For micrographs collected on photographic film and scanned in use CTFFIND 3. For images from CCDs or direct detectors use CTFFIND 4.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

System designed for automated collection of images from a transmission electron microscope.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Web based platform that integrates several bioinformatics tools for screening and annotation of cDNA construct sequences. Translates the nucleotide sequence of the construct into an amino acid sequence, aligns the predicted sequence to a reference database of protein sequences and identifies the best protein and isoform match, annotates any variants present in the construct, and incorporates disease-associated mutations and transcriptomic data.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous