Curator Dashboard

Software program that controls instrument operation, data collection and analysis. Software for CytoFLEX Platform by Beckman Coulter.

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• RRID-Legacy
• 8 years ago - by Anonymous

Web server for RNA and DNA secondary structure prediction and analysis. Software package as RNA folding prediction program.

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• RRID-Legacy
• 8 years ago - by Anonymous

Open source software tool to leverage supervised machine learning techniques to analyze data. Can assist with tasks such as choosing appropriate models for data. Data science assistant for generating results from large and complex data problems.

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• SciCrunch
• 8 years ago - submitted by Anh Nguyet Vu

Mini Thermal Cycler PCR is compact thermal scanner, catalog number PTC-150 Cycler with Hot Bonnet heated lid for oil free cycling by MJ Research.

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• SciCrunch
• 8 years ago - by Anonymous

TGF-beta 1 (transforming growth factor beta 1) is one of three closely related mammalian members of the large TGF-beta superfamily that share a characteristic cystine knot structure (1‑7). TGF-beta 1, -2 and -3 are highly pleiotropic cytokines that are proposed to act as cellular switches that regulate processes such as immune function, proliferation and epithelial-mesenchymal transition (1‑4). Each TGF-beta isoform has some non‑redundant functions; for TGF-beta 1, mice with targeted deletion show defects in hematopoiesis and endothelial differentiation, and die of overwhelming inflammation (2). Human TGF‑ beta 1 cDNA encodes a 390 amino acid (aa) precursor that contains a 29 aa signal peptide and a 361 aa proprotein (8). A furin‑like convertase processes the proprotein to generate an N‑terminal 249 aa latency‑associated peptide (LAP) and a C‑terminal 112 aa mature TGF‑ beta 1 (8, 9). Disulfide‑linked homodimers of LAP and TGF‑ beta 1 remain non‑covalently associated after secretion, forming the small latent TGF‑ beta 1 complex (8‑10). Covalent linkage of LAP to one of three latent TGF‑ beta binding proteins (LTBPs) creates a large latent complex that may interact with the extracellular matrix (9, 10). TGF‑ beta is activated from latency by pathways that include actions of the protease plasmin, matrix metalloproteases, thrombospondin 1 and a subset of integrins (10). Mature human TGF‑ beta 1 shares 100% aa identity with pig, dog and cow TGF‑ beta 1, and 99% aa identity with mouse, rat and horse TGF‑ beta 1. It demonstrates cross‑species activity (1). TGF‑ beta 1 signaling begins with high‑affinity binding to a type II ser/thr kinase receptor termed TGF‑ beta RII. This receptor then phosphorylates and activates a second ser/thr kinase receptor, TGF‑ beta RI (also called activin receptor‑like kinase (ALK) ‑5), or alternatively, ALK‑1. This complex phosphorylates and activates Smad proteins that regulate transcription (3, 11, 12). Contributions of the accessory receptors betaglycan (also known as TGF‑ beta RIII) and endoglin, or use of Smad‑independent signaling pathways, allow for disparate actions observed in response to TGF‑ beta in different contexts (11).

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• SciCrunch
• 8 years ago - submitted by Jialei Duan

Software suite of proprietary databases that contain one of longest running and largest collection of privately and publicly insured, de identified patient data in USA. Family of data sets that fully integrate many types of data for healthcare research.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software for fitting of atomic models into density maps derived from x-ray crystallography or electron microscopy.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software R package for interactive analysis and visualization of transcriptomics data. Operating systems are macOS, Linux, Windows.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software tool as analyzer for kidney single cell datasets. Allows users to query gene expression from mouse or human kidney and human kidney organoid single cell datasets. For details about datasets visit ReBuilding a Kidney website.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Public research university in West Lafayette, Indiana, and flagship campus of Purdue University system. University was founded in 1869 after Lafayette businessman John Purdue donated land and money to establish college of science, technology, and agriculture in his name.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool to display surface of macromolecule and its properties. Uses projections to map van der Waals or solvent accessible surface of macromolecule onto plane., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 8 years ago - by Anonymous

Microarray Scanner is part of microarray analysis solution from Agilent Technologies. Laser induced fluorescence scanner designed to read microarrays printed on standard slides. Measures fluorescence intensity of labeled sample nucleic acid bound to microarrays.

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• RRID-Legacy
• 8 years ago - submitted by yoshifumi miyawaki

Software tool as analysis application BZ-H1A by Keyence, Japan for fluorescence microscope BZ-8100 series.

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• RRID-Legacy
• 8 years ago - submitted by yoshifumi miyawaki

Software tool as source code used in analysis of GC MS data from rice samples. Workflow for statistical analysis of GC MS data from field grown rice collected during rewatering after exposure to combined drought and heat stress.

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• RRID-Legacy
• 8 years ago - submitted by Lovely Mae Lawas

Open source pulse train generator that allows users to create and trigger software defined trains of voltage pulses with high temporal precision. Generates precisely timed pulse sequences for use in research involving electrophysiology or psychophysics.

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• RRID-Legacy
• 8 years ago - by Anonymous

All in one fluorescence microscope BZ-X710 by Keyence, Japan.

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• RRID-Legacy
• 8 years ago - submitted by yoshifumi miyawaki

Software suite of functions for EMG data visualization and processing. Open source Matlab toolbox for electromyography combined with transcranial magnetic stimulation. MATLAB toolbox for the collection, analysis, and visualization of EMG and TMS.

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• SciCrunch
• 8 years ago - submitted by Ian Greenhouse

Software tool to separate contaminating reads from FASTQ files.

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• SciCrunch
• 8 years ago - submitted by Joseph Ryan

Software tool to make artificial mate pairs from long sequences for scaffolding.

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• SciCrunch
• 8 years ago - submitted by Joseph Ryan

anti-EGF Receptor (3F12) Mouse mAb is antibody from Zen bioscience used only in research.

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• SciCrunch
• 8 years ago - submitted by Wang Zheng