Curator Dashboard

Web tool for gene expression profiling, meta-analysis and systems understanding. Used for statistical, visual and network-based meta-analysis of gene expression data.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software application for matching a single candidate protein sequence and its modifications against a set of mass spectrometric observations. Used to analyze top-down mass spectrometry data.

• Resource
• SciCrunch
• 8 years ago - submitted by Paul Thomas

Organization dedicated to analysis of protein molecules by mass spectrometry, with a focus on intact protein measurements. Biomedical projects originated from clinical and basic research programs that utilize both targeted and untargeted analyses. Used for the development of new technology, training and dissemination of proteomics methods to laboratories and scientists.

• Organization
• SciCrunch
• 8 years ago - submitted by Paul Thomas

IHC,WB

• Resource
• SciCrunch
• 8 years ago - submitted by Huizhu Liu

Molecular computing based on XNA-built alphabets.

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• RRID-Legacy
• 8 years ago - submitted by Oleg Gradov

Krukowskikh, V., & Gradov, O. (2014). Praxeometric analysis of the selfish genetic machinery using W. Gasparski criteria for extended phenotypic expressivity. Life of Genomes - 2014. https://doi.org/10.13140/2.1.3298.9123

• Resource
• RRID-Legacy
• 8 years ago - submitted by Oleg Gradov

Gradov's Initiative Scientific Instrumentation Group, INEPCP [before 2016] Biophysical Channelomics Subunit: https://scientificinstrumentation.wordpress.com/our-projects/instrumentation-for-channelomics/

• Resource
• NIF
• 8 years ago - submitted by Oleg Gradov

Acoustic DSP-assisted imagie-based footprinting of neural tissues.

• Resource
• NIF
• 8 years ago - submitted by Oleg Gradov

Software tool for windowed adaptive trimming for fastq files using quality. Supports quality values like Illumina, Solexa, and Sanger. Takes the quality values and slides a window across them whose length is 0.1 times the length of the read.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software as R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding. Used for high-dimentional data visualisation.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool to analyze Flow or mass cytometry data using a Self-Organizing Map. Used to obtain an overview of how all markers are behaving on all cells, and to detect subsets that might be missed otherwise.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software for burst analysis of freely diffusing single-molecule Förster Resonance Energy Transfer (smFRET) experiments to study cellular processes at the molecular scale. Used for single and multi-spot single-molecule FRET (smFRET) data.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for automated processing, analysis, and visualization of data acquired by single molecule localization microscopy methods such as PALM and STORM. ImageJ interactive and modular plugin for SMLM data analysis and super-resolution imaging.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tools for analyzing co-localization single-molecule spectroscopy image data.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Matlab based scripts for load, save, make, reslice, view and edit both Neuroimaging Informatics Technology Initiative (NIfTI) and ANALYZE data on any platform.

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• SciCrunch
• 8 years ago - submitted by Ka Tsun Ng

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147) ; CIRCexplorer is a combined strategy to identify junction reads from back spliced exons and intron lariats.; http://yanglab.github.io/CIRCexplorer/

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool as a combined strategy to identify junction reads from back spliced exons and intron lariats. Computational pipeline to precisely identify junction reads from Circularized Exons. Used to identify circular RNAs (circRNAs and ciRNAs).

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for single molecule Molecular Inversion Probes data analysis. This is a stand-alone perl script. Except that this is dependent on the samtools, no installation required.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software customizable toolbox for parameter estimation in MathWorks MATLAB. Offers scalable algorithms for optimization, uncertainty and identifiability analysis which do not depend on any problem-specific assumptions.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Web tool for CRISPR/Cas9 target prediction. Identifies and ranks all candidate sgRNA target sites according to their off-target quality and displays full documentation.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth