Curator Dashboard

Software R package to measure reproducibility of findings identified from replicate experiments and to provide highly stable thresholds based on reproducibility.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool as catalog of inferred sequence binding preferences. Online library of transcription factors and their DNA binding motifs.

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• RRID-Legacy
• 8 years ago - by Anonymous

Abcam Cat# ab138222

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• SciCrunch
• 8 years ago - submitted by Yingying Jiang

Software package for analysis of sequencing data. Command line based bioinformatics suite to analyze biological data acquired through biological experiments.

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• RRID-Legacy
• 8 years ago - by Anonymous

Open source and stand alone software for assessing vascular reactivity. Used in pressure myograph system.

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• RRID-Legacy
• 8 years ago - by Anonymous

You can use SMART in two different modes: normal or genomic.The main difference is in the underlying protein database used. In Normal SMART, the database contains Swiss-Prot, SP-TrEMBL and stable Ensembl proteomes. In Genomic SMART, only the proteomes of completely sequenced genomes are used; Ensembl for metazoans and Swiss-Prot for the rest.

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• SciCrunch
• 8 years ago - submitted by Jie Yang

ProDom is a comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database

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• SciCrunch
• 8 years ago - submitted by Jie Yang

PRINTS is a compendium of protein fingerprints.

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• SciCrunch
• 8 years ago - submitted by Jie Yang

Software package for implementation of Pairwise Sequentially Markovian Coalescent model. Infers population size history from diploid sequence.

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• SciCrunch
• 8 years ago - submitted by Jie Yang

Software application as probabilistic multiple alignment program for DNA, codon and amino-acid sequences. Allows for defining potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences.

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• SciCrunch
• 8 years ago - submitted by Jie Yang

Software tool as 3D de novo assembly (3D DNA) pipeline. Used to help generate HI-C assembly.

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• SciCrunch
• 8 years ago - submitted by Jie Yang

Software platform for analyzing kilobase resolution Hi-C data. Open source tool for analyzing terabase scale Hi-C datasets. Allowes to transform raw sequence data into normalized contact maps.

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• SciCrunch
• 8 years ago - submitted by Jie Yang

Software tool as de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies. It assembles raw reads without error correction and then builds consensus from intermediate assembly output. Desiged to assemble huge genomes in very limited time.

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• SciCrunch
• 8 years ago - submitted by Jie Yang

Cloud based web platform connecting researchers, research organisations, funders and publishers in automated workflow management tool. Platform provides infrastructure for researchers, funders and publishers participating in Open Access Publishing. Features searchable database of journals compliant with research funders Open Access policies, connects researchers directly to journals submission systems, coordinates open access fee payments for funder with publisher upon acceptance, and supports compliancy by overseeing deposition of papers to designated repositories.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Test to see if user receives RRID immediately at webpage after submission

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Web application for real time 3D display of surface mesh data representing structural parcellations and generation of user defined cut planes from volumetric atlases.

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• NIF
• 8 years ago - by Anonymous

Software tool as data and metadata repository of Extracellular RNA Communication Consortium. Atlas includes small RNA sequencing and qPCR derived exRNA profiles from human and mouse biofluids. All RNAseq datasets are processed using version 4 of exceRpt small RNAseq pipeline. Atlas accepts submissions for RNAseq or qPCR data.

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• SciCrunch
• 8 years ago - submitted by William Thistlethwaite

Software tool for genomic intervals querying and processing built on top of Apache Spark. Elastic, fast and scalable SQL oriented solution for processing and querying genomic intervals.

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• SciCrunch
• 8 years ago - by Anonymous

Software tool as probabilistic multi omics data matching procedure to curate data, identify and correct data annotation and errors in large databases. Used to check potential labeling errors in profiles where number of cis relationships is small, such as miRNA and RPPA profiles.

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• SciCrunch
• 8 years ago - submitted by Eunjee Lee

Software event based framework for processing and controlling data streams. Visual language designed for making software systems that require rich and rapid interaction with external world.

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• RRID-Legacy
• 8 years ago - by Anonymous