Curator Dashboard

Software R package for analysis of single cell RNA-seq expression, normalization and differential expression data. Provides framework to perform cell and gene filtering, quality control, normalization, dimension reduction, clustering, differential expression, and visualization functions.

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• SciCrunch
• 8 years ago - submitted by Joseph powell

Software tool for folding RNA secondary structures, including two limited classes of pseudoknots. Performs abstract shape analysis for structures holding pseudoknots up to complexity of kissing hairpin motifs. Successor of pknotsRG. Used for secondary structure prediction including kissing hairpin motifs.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software validation tool that checks submitted folder structure for compliance to BIDS data standard. Validates Brain Imaging Data Structure.

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• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool as stochastic algorithm for estimating maximum likelihood phylogenies. Used for phylogenomic inference.

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• RRID-Legacy
• 8 years ago - by Anonymous

Web server for RNA secondary structure prediction. Predicts RNA secondary structure from RNA sequence. Based on generalized centroid estimator.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool for pairwise sequence alignment. Identifies local similarities in two input sequences. One of EMBL-EBI search and sequence analysis tools.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool to analyze real-time PCR data and run PCR system in software controlled mode., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 8 years ago - submitted by Timothy Errington

Software Python tool as viewer for MRI data and numpy arrays.

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• NIF
• 8 years ago - by Anonymous

Software tool as support for working with light and electron microscopy fly brain data. Part of suite of R packages based on NeuroAnatomy Toolbox. Provides tools to move between adult brain EM and light level data, emphasising interaction between CATMAID web application and R Neuroanatomy Toolbox package.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software R package for 3D visualisation and analysis of biological image data, especially tracings of single neurons.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software R package as single cell regulatory network inference and clustering. Used for simultaneous gene regulatory network reconstruction and cell state identification from single cell RNA-seq data.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Platform for Secure Access to Research Data and E-Infrastructure based on European Standards for Health Case information. Used for secure processing of sensitive personal data in research in health and care sector.

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• SciCrunch
• 8 years ago - by Anonymous

NLP routines for extracting database and tool mentions from free text

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• dkNET
• 8 years ago - submitted by Maryann Martone

Software R package for inference of cell fate bias from single cell RNA-seq data. Iterative supervised learning algorithm for probabilistic quantification of cell fate bias in progenitor populations.

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• RRID-Legacy
• 8 years ago - by Anonymous

Algorithm for identification of rare and abundant cell types from single cell transcriptome data. Based on transcript counts obtained with unique molecular identifies. Used for discovering rare cell types and corresponding marker genes in healthy and diseased organs. Operating system Unix/Linux, Mac OS, Windows.

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• RRID-Legacy
• 8 years ago - by Anonymous

Algorithm for derivation of cell lineage trees based on RaceID2 results and predicts multipotent cell identites. StemID2 is algorithm for identification of lineage trees based on RaceID3 analysis. Used for better understanding of differentiation dynamics in variety of systems. Written in R computing language.

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• RRID-Legacy
• 8 years ago - by Anonymous

Center is part of University of British Columbia Faculty of Medicine, located at British Columbia Children Hospital Research Institute (BCCHR) in Vancouver, British Columbia, Canada. Research at CMMT is focused on discovering genetic susceptibility to illnesses such as Huntington Disease, Type 2 diabetes and bipolar disorder.

• Organization
• SciCrunch
• 8 years ago - submitted by Ethan Badger

Core focused on systems genetics approach to understanding diseases, development, aging, and fertility in mouse. Projects range from development of new community resources, such as Collaborative Cross, to development of tools and assays for measuring genetic diversity and discerning genomic structure. Collaborative Cross is reference population for mapping multigenic traits that would be free of population structure and it is new panel of recombinant inbred lines generated by randomizing genetic diversity of existing inbred mouse resources.

• Organization
• SciCrunch
• 8 years ago - submitted by Ethan Badger

Contract research organization that provides genetically engineered mouse models (GEMMs) and services to global preclinical Research and Development communities. Specializes in developing animal models using cutting edge gene-editing technologies with large collection of cKO/KO (conditional knockout/knockout) mice, humanized mice, immunodeficient mice, and germ-free mice.Provides preclinical services, including mouse model customization, pharmacology services such as drug efficacy testing and mouse phenotyping, CRISPR/Cas9 gene-editing, cryopreservation, rapid expansion, and customized breeding.

• Organization
• SciCrunch
• 8 years ago - submitted by Ethan Badger

Core facility for cystic fibrosis mouse strains. Services include mouse production from current strains and creation of new strains, mouse strain maintenance, tissue acquisition, genotyping and treatment of mice with IACUC approved drugs to test potential therapies. Maintains centralized database that contains breeding history, phenotypes observed and experimental records of various CF mouse strains.

• Organization
• SciCrunch
• 8 years ago - submitted by Ethan Badger