Curator Dashboard

Software for collecting, analyzing, and reporting life science data. Used to control inhalation exposure systems, track real-time animal respiration, and calculate precise delivered drug doses in pre-clinical research. It automates aerosol delivery, monitors lung function data, and manages experimental protocols.

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• 2 weeks ago - by Anonymous

Core provides analytic expertise and infrastructure needed to transform complex spatial data into actionable insights to support cancer research, precision population health, learning health system interventions and policy and resource planning at institutional and regional levels.

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• 2 weeks ago - by Anonymous

Core specializes in artificial intelligence-based approaches to elucidate relationships between large imaging, bioenergetics, genomic, and proteomic data sets. Provided services include: 1) foundational training for those getting started with high-performance computing and Arkansas Research Platform (ARP), 2) training and support for the collaborative use of a 508 TB data storage server exclusively maintained for and catering to AIMRC researchers, 3) training for Python programming, basic data mining, and machine learning, 4) training and support for using open-source deep learning based biomedical imaging resources (e.g., ZeroCostDL4Mic and Bioimage Model Zoo), and 5) customized solutions for deep learning based and large foundational models based biomedical imaging analysis, multi-omics data integration and analysis, and quantitative analysis pipelines for large data sets.

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• 2 weeks ago - by Anonymous

Core supports mechanistic human laboratory studies and randomized clinical trials by identifying, coordinating, and providing the scientific expertise, clinical and technical capabilities, and other resources needed for their research projects.

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• 2 weeks ago - by Anonymous

Software tool to predict linear B-cell epitopes (BCEs) from protein sequences. It helps scientists with peptide vaccine design, immuno-diagnostic test development, and antibody production. Used for linear epitope prediction using deep protein sequence embeddings.

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• 2 weeks ago - by Anonymous

Web-based prediction tool used to identify linear B-cell epitopes. Contains two prediction modes. The first one identifying peptide sequences as BCEs or non-BCEs, while later one is aimed at providing users with the option of mining potential BCEs from protein sequences.

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• 2 weeks ago - by Anonymous

Software tool used to predict linear B-cell epitopes (BCEs) from protein sequences. It helps scientists find parts of a pathogen that trigger immune responses. Interpretable deep neural network for accurate prediction of linear B-cell epitopes.

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• 2 weeks ago - by Anonymous

Software tool to predict CD4+ T cell epitopes, model MHC-II antigen presentation, and assess immune responses. It helps scientists with vaccine design, cancer neoantigen discovery, and tracking viral mutations.

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• 2 weeks ago - by Anonymous

Software tool for predicting MHC class II antigen immunogenicity through transfer learning. Used to predict whether epitope-MHC class II complex can elicit T cell response.

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• 2 weeks ago - by Anonymous

Software tool that predicts how protein pieces bind to Major Histocompatibility Complex (MHC) molecules. It uses deep learning to process peptide sequences, handle variable lengths, and evaluate both common and rare alleles. Used to predicts peptide-MHC binding. Can predict binding for common or rare alleles of MHC class I or II with a single neural network architecture.

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• 2 weeks ago - by Anonymous

Web multimodal recurrent neural network tool designed to predict HLA-II (Human Leukocyte Antigen class II) peptide ligand presentation. It uses cell HLA alleles, peptide sequences, and source genes to evaluate antigen presentation. Used for predicting the likelihood of antigen presentation from a gene of interest in the context of specific HLA class II alleles.

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• 2 weeks ago - by Anonymous

Webserver for predicting immunogenic neoantigens. Used to identify immunogenic neoepitopes by capturing the structural properties of peptide-MHC pairs with T cell reactivity.

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• 2 weeks ago - by Anonymous

Environmentally controlled facility that provides the equipment, advice, and technical support required to enable research involving laboratory rodents. Provides husbandry, care, and animal welfare while supporting preclinical in vivo models. Provides technical, husbandry, and legislative support.

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• 2 weeks ago - submitted by Nadia Cross

Core provides bioanalytical and pharmacokinetic support for the research groups and associated clinical trials within the institute, creating a bridge between the laboratory and clinic. Offers services performing bioanalysis using mass spectrometry, quantify therapeutic drugs as well as small molecule cancer related metabolites (targeted metabolomics), analysis of samples from matrices including plasma, blood, tissues, tumours, and cells.

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• 2 weeks ago - submitted by Nadia Cross

Variant interpretation platform for clinical genetics laboratories. Automates ACMG/AMP 2015 classification using Bayesian point-based framework (Tavtigian et al. 2018) with BayesDel ClinGen SVI-calibrated thresholds (Pejaver et al. 2022). Integrates 8 reference databases (gnomAD v4.1, ClinVar, dbNSFP 4.9c, SpliceAI, gnomAD Constraint, HPO, ClinGen, Ensembl VEP). Analyzes nuclear and mtDNA variants, structural and copy-number variants (SV/CNV), with trio/family and cohort analysis. Supports HPO-based phenotype matching with semantic similarity scoring, biomedical literature mining across 2M+ PubMed publications, and structured clinical report generation. Delivers full clinical interpretation of whole genome sequencing (WGS) in under 15 minutes. EU-hosted on dedicated infrastructure in Helsinki, Finland (GDPR-compliant).

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• 2 weeks ago - submitted by Vladimir Mitev

Software tool for synteny block discovery, evolutionary breakpoint identification, and ancestral genome reconstruction. Used in comparative genomics and evolutionary biology, enabling deeper insights into genomic architecture and evolutionary relationships.

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• 2 weeks ago - submitted by Ajay Bhatia

Core supports researchers in the use of modern light microscopy systems. Provides advanced optical imaging equipment, technical expertise, and hands-on training for biomedical and clinical research projects. Microscope platforms include confocal and multiphoton microscopy for imaging fluorescently labeled structures to enable the investigation and characterization of cells, tissues, organisms, and biomaterials with high spatial and temporal resolution.

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• 3 weeks ago - submitted by Michael Vogt

Software R package to audit research outputs for compliance with open science best practices. Evaluates adherence to standards such as pre-registration and data availability. Used for automated checks of research outputs for best practices.

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• 3 weeks ago - by Anonymous

Web browser-based platform designed to work with biological sequences without needing to install specialized software or create an account. Bioinformatics toolkit for DNA, RNA and protein sequence analysis: reverse complement, translation, ORF finding, primer/oligo Tm and design, restriction sites and cloning, protein properties, codon optimisation, CRISPR guide design, and sequence alignment. Also exposes a Model Context Protocol (MCP) server and JSON REST API for programmatic and AI-agent access. No account or API key required.

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• 3 weeks ago - by Anonymous

Core provides support for data analysis, statistics, and software development. Offers advice on experimental design, statistical modelling, and hypothesis testing and runs training courses to assist research scientists in performing their own analyses.

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• 3 weeks ago - by Anonymous