Curator Dashboard

Software tool for assembling transcripts from RNA-Seq data. Explores surprising computational parallels between assembly of transcriptomes and single cell genomes. Suitable for all kind of organisms. Part of SPAdes package since version 3.9.

• Resource
• SciCrunch
• 8 years ago - submitted by Elena Bushmanova

Software tool as universal assay calculator for RIA, ELISA, IRMA, colorimetric or any other type of assay by Biosoft. Maintains record for each assay, and enables standard curve and QCs to be compared and adjusted. Can process data from 96 and 384-well plate readers in any order.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool to automate cell type identification, cell type-specific pathway analyses, graph theory-based analysis of gene regulation, and detection of autocrine-paracrine signaling networks. Finds Gene and Autocrine-Paracrine Networks from Human Islet scRNA-Seq.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

MaizeDIG is a genotype-phenotype database for maize images. MaizeDIG supports multiple reference genome assemblies, is seamlessly integrated with genome browsers to accommodate custom tracks showing tagged mutant phenotypes images in their genomic context, and allows for custom tagging of images to highlight the phenotypes. This is accomplished through an interface allowing users to create image-to-gene links and is accessible via search tools.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Carson Andorf

MaizeDIG is a genotype-phenotype database for maize images. MaizeDIG supports multiple reference genome assemblies, is seamlessly integrated with genome browsers to accommodate custom tracks showing tagged mutant phenotypes images in their genomic context, and allows for custom tagging of images to highlight the phenotypes. This is accomplished through an interface allowing users to create image-to-gene links and is accessible via search tools.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Carson Andorf

Genotype and phenotype database for maize images based on BioDIG. Supports multiple reference genomes and has been integrated with the MaizeGDB Genome Browser to make custom tracks showing mutant phenotypes within their genomic context. Allows for custom tagging of images to highlight regions related to the phenotypes. This is accomplished through an interface allowing users to create links from images to genomic coordinates and to curate and search images by gene model ID, gene symbol, and gene name.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Carson Andorf

Software tool for nonlinear mixed effects modelling. Used for population pharmacokinetic and pharmacodynamic analysis and to simulate data and to fit data. Used in the development of new drugs. NONMEM versions up through 6 are the property of the Regents of the University of California, San Francisco, but ICON Development Solutions has exclusive rights to license their use. NONMEM 7 up to the current version is the property of ICON Development Solutions.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software Python tool for scripting and presenting stimuli for visual neuroscience.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software package for interactive NMR spectrum visualization, resonance assignment and data analysis. Graphical elements allow to enter information and to view status of data and library functions manipulate the CCPN data model objects to record the scientific information. Software is cross platform and works on Linux, Mac OSX, Windows and Unix.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Project provides tools and knowledge to maximize the impact of the biological NMR studies. CCPN software facilitates data analysis and software integration. Project promotes the exchange of knowledge and provides training and best practices for the NMR community and has leading role in the development of NMR data sharing standard and coordination of NMR instrumentation proposals. Includes CCPN Data Model for macromolecular NMR and related areas, CcpNmr suite of programs like Analysis for spectrum visualization, resonance assignment and analysis, ChemBuild to create chemical structure templates in an NMR aware manner, FormatConverter for data exchange with common textual NMR formats and SpecView for swift, format independent peak and spectrum visualization.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Model to cover data for macromolecular NMR spectroscopy from the initial experimental data to the final validation. Used for the large scale data deposition, data mining and program interoperability. Enables movement from one software package to another without difficulties with data conversion or loss of information. Works with CcpNmr Analysis software for analysis and interactive display, CcpNmr FormatConverter for allowing transfer of data from programs used in NMR to and from the Data Model, and the CLOUDS software for automated structure calculation and assignment. Used within the CCPN software suite for NMR spectroscopy and at the BioMagResBank for converting existing deposited restraint lists to a standard IUPAC nomenclature.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Core facility from the University of Alberta, Canada.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Ethan Badger

ZEISS Axio Zoom.V16 microscope system includes high resolution zoom microscope for large fields. Focuses on reflected light microscopy of materials. Uses optical components to manage reflected light from specimen surface. Designed for observing surface properties and structures of materials using reflected light. System focuses on providing high resolution image quality and contrast for reflected light microscopy of solid materials., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 8 years ago - submitted by MAYUKO KANO

Fluorescence microscope of BZ-X series by KEYENCE CORPORATION of America. Captures high resolution images without the blurring caused by out of focus fluorescent signals. Optical sectioning allows the user to obtain images comparable to those captured on a laser confocal microscope, but in a fraction of the time and without the damaging effects of a laser., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 8 years ago - submitted by MAYUKO KANO

Software tool to convert 3D scans into parametric models. Transforms 3D scan data into highly accurate surface, polygon and native CAD models. Used for reverse engineering, product design, rapid prototyping and analysis.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Provides Prism softwares and services that integrate advanced imaging into the clinical workflow for brain mapping from acquisition through processing, visualization, and export to PACS. Prism integrates functional MRI, diffusion MRI, perfusion, MR spectroscopy, and PET/CT into a unified workflow for diagnosis and treatment planning in brain disorders. Processing is also available as a cloud deployed service, Prism Serve. Research support includes import/export for imaging and derived quantitative data in both DICOM and research formats such as AFNI and Trackviz.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software R package for analysis of Affymetrix Data. Contains samples data files of a large size.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Web interface for computational prediction of nuclear hormone receptor binding sites in genomic sequences. Flexible Hidden Markov Model framework to allow for variable spacing and orientation of half sites. Allows for parameter modifications.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool to create and provide heat maps through a graphical interface. Allows to create an expression, pairwise comparison, image overlay, geomap, and geocoordinate heat maps for different data types and applications. Used to interactively visualize data.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

American multinational corporation and technology company headquartered in Santa Clara, California, in the Silicon Valley. Semiconductor chip maker being overtaken by Samsung. Inventor of the x86 series of microprocessors, the processors found in most personal computers (PCs). Intel supplies processors for computer system manufacturers such as Apple, Lenovo, HP, and Dell. Intel also manufactures motherboard chipsets, network interface controllers and integrated circuits, flash memory, graphics chips, embedded processors and other devices related to communications and computing.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth