Curator Dashboard

Simulation submission manager for computational neuroscience. It manages simulation processing, file transfers, and job submission for a heterogeneous mixture of standalone server, cluster, and cloud servers.

• RRID-Legacy
• 9 years ago - submitted by David Kennedy

Toolkit of MATLAB functions for computing integrated information ('phi' or 'Φ') from neural data. The toolbox consists of downloadable codes that perform practical computation.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous

Software tool for designing short interfering error-free RNA oligos.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous

Software package for structural determination and other functions in the field of structural biology. Its programs can perform strategy and simulation, 3-D processing, mosaicity refinement during processing, variable spot size, easy change of the space group, report generation, and other functions.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous

Cell repository that aims to share cell samples for the scientific advancement of Type 1 Diabetes research. Cell lines can be requested from their cell bank inventory.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Atlas was created from MRI scans of squirrel monkey brains. The atlas is currently comprised of multiple anatomical templates, diffusion MRI templates, and ex vivo templates. In addition, the templates are combined with histologically defined cortical labels, and diffusion tractography defined white matter labels.

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• NIF
• 9 years ago - submitted by Matt Travers

Non-redundant collection of publicly annotated DNA, CDS, and protein sequences of protein coding intronless genes from human genome.

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• SciCrunch
• 9 years ago - submitted by Kristen Jensen

Web server for statistical, functional and integrative analysis of metabolomics data. Web based tool suite used for metabolomic data processing, normalization, multivariate statistical analysis, and data annotation, biomarker discovery and classification.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Cloud-based mass spectrometry data processing platform for metabolomics and lipidomics.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Database of known biochemical compounds collected from existing biochemical databases, as well as computationally generated human phase I and phase II metabolites of known compounds.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Metadata-centric, auto-curating repository designed for storage and querying of mass spectral records. It contains metabolite mass spectra, metadata and associated compounds.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Public repository of mass spectral data which allows users to search similar spectra on a peak-to-peak basis, on a neutral loss-to-neutral loss basis, or by the m/z value and molecular formula, search chemical compounds by substructures, and keyword search chemical compounds

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Ocean general circulation model; more specifically, a data-assimilative hybrid isopycnal-sigma-pressure (generalized) coordinate ocean model.

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• RRID-Legacy
• 9 years ago - by Anonymous

Matlab toolbox used to help analyze electrophysiological and behavioral data recorded from freely moving animals.

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• RRID-Legacy
• 9 years ago - by Anonymous

Cloud-based executable research platform for discovering and running scientific code. Code Ocean is designed to give researchers and developers a way to share, discover and run code published in academic journals and conferences. Users can upload code and data in various programming languages and link working code in a computational environment with the associated article, with Code Ocean assigning a Digital Object Identifier (DOI) to the algorithm.

• Resource
• dkNET
• 9 years ago - submitted by Maryann Martone

De novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 9 years ago - by Anonymous

Graph-based alignment of next generation sequencing reads to a population of genomes.

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• SciCrunch
• 9 years ago - by Anonymous

Commercial organization that provides services and products in global healthcare and diagnostics.

• Organization
• SciCrunch
• 9 years ago - submitted by Kristen Jensen

Reference implementation of the Common Workflow Language standards. It provides complete features and tools and comprehensive validation of CWL. The reference implementation consists of two packages. The cwltool package is the primary Python module containing the reference implementation in the cwltool module and console executable by the same name. The cwlref-runner package is optional and provides an additional entry point under the alias cwl-runner, which is the implementation-agnostic name for the default CWL interpreter installed on a host.

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• SciCrunch
• 9 years ago - submitted by Michael Crusoe

Software toolkit with various functions for the analysis of nucleosome and protein occupancy by sequencing.

• Resource
• SciCrunch
• 9 years ago - submitted by Kristen Jensen