Curator Dashboard

Software tool as end to end software for data acquisition, processing, and result extraction of Arabidopsis thaliana growth. Framework uses photometric stereo based 3D imaging system with computer vision and deep learning for tracking and quantifying both plant growth and movement parameters.

• Resource
• SciCrunch
• 8 years ago - submitted by Gytis Bernotas

Software package for automated functional annotation of LTR retrotransposons for comparative genomics studies. Used to perform de novo functional annotation of LTR retrotransposons from any genome assembly in fasta format.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Julien Bane

Open source software tool for identifying miniature inverted repeat transposable elements in large genomes. Used to process large scale genomes, to find and classify MITEs using an efficient alignment strategy to retrieve nearby inverted repeat sequences.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Julien Bane

Software tool for inference using permutation methods. Requires Matlab or Octave. Can be executed from inside either environment, or directly from the shell and can be called from scripts. For users who are familiar with statistics and willing to use experimental analysis tools.

• Resource
• SciCrunch
• 8 years ago - submitted by Anderson Winkler

Software tool to visualize and explore toxicogenomic fingerprints of three model substances.

• Resource
• SciCrunch
• 8 years ago - submitted by Andreas Schüttler

Software R package to derive toxicogenomic fingerprints from microarray data.

• Resource
• SciCrunch
• 8 years ago - submitted by Andreas Schüttler

Software tool as fast, batch processing feature extraction software for differential analysis that supports data from Agilent GC/MSD, GC/Q-TOF, LC/TOF and LC/Q-TOF instruments. Speeds up differential and flux analysis workflows using intuitive user interface. Used to analyze raw mass spectrometry data, choose peaks.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tool as scaffolding algorithm based on maximum weight matching able to produce high quality scaffolds from next generation sequencing data (reads and contigs). Able to handle reads with both short and long insert sizes.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Julien Bane

Software tool for calculating optimal pretension conditions for microvascular or any small tubular tissue research. DMT Normalization Add-On, provided by ADInstruments, is included as part of LabChart Pro or can be purchased separately.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tool to operate the EMX series of spectrometers by Bruker. Provides rapid data analysis of 1D and 2D data sets, provides environment for acquisition and processing of CW-EPR and CW-ENDOR spectra with the EMXplus and EMXmicro series of spectrometers.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

HomeProductsUpright MicroscopesClinical MicroscopesBX43 The BX41 microscope offers an outstanding range of features, high optical performance and is the ideal platform for digital imaging. This flexible microscope offers various contrast methods and superior optics combined with true-color LED illumination for excellent color rendering. Efficiency is maximized by the ergonomic design, while ease of use is optimized by the light intensity manager, which eliminates manual intensity adjustments for each objective. A wide range of accessories makes it possible to expand the system to cover more techniques, making it adaptable to meet future requirements. The BX41 has a wide-range of applications and is especially suited for clinical research. Specifications unique to this model include a large fine-focus knob that can be moved to the right or left side and a 6v-30w halogen Kohler lamp with pre-set buttons for convenient photo documentation. INSUFFICIENT INFORMATION

• Resource
• RRID-Legacy
• 8 years ago - submitted by Karolina Jabłońska

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 18th, 2023. Software that uses long reads to close gaps in the assemblies., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Julien Bane

UK’s national organization for the 3Rs (Replacement, Reduction and Refinement) to advance the 3Rs framework for performing more humane animal research by focusing on scientific impacts and benefits to better reflect contemporary scientific practice and developments.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Web based tool to help in vivo researchers improve design, conduct, analysis and reporting of animal experiments.Provides automated feedback on proposed design and generates graphical summary that aids communication with colleagues, founders and regulatory authorities. Addresses causes of irreproducibility.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Web based ontology enrichment tool for lipidomic data analysis. Used for lipidomics to search for enriched LION-terms in lipidomic subsets. LION-terms contain detailed lipid classification by LIPIDMAPS, biophysical data, lipid functions and organelle associations. Freely accessible in a platform independent way.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Portal provides software library and python scripts for medical image processing. Open source set of software tools for medical image processing, medical image analysis, image registration, statistical analysis, quantitative MRI processing, image denoising and filtering, and segmentation developed by VISAGES/Empenn research team. Available as Github repository and compiled binaries for various OS including OSX, Fedora, Ubuntu, Windows.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software package as de novo assembler for single molecule sequencing reads. Used for assembling long, error prone reads such as those produced by PacBio and Oxford Nanopore Technologies, for fast and accurate genome reconstructions. Available for Linux and MacOS platforms.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Julien Bane

FV3000 is a laser scanning confocal microscope system that captures high-resolution, high-contrast images by scanning samples point by point, enabling precise 3D fluorescence imaging. The system supports inverted and upright configurations and accommodates various objectives with magnifications ranging from 1.25× to 100×, including oil, silicone, and dry lenses, which allows imaging of both macro and micro-scale samples. It is equipped with multiple laser lines for excitation, including 405 nm, 488 nm, 561 nm, and 640 nm, as well as additional lines in some configurations (445 nm, 514 nm, 594 nm, 630 nm), enabling the use of several fluorophores simultaneously. On the detection side, the microscope uses high-sensitivity photomultiplier tube detectors, including GaAsP PMTs and multi-alkali PMTs.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Karolina Jabłońska

Open source software package for fast genome analysis from unassembled short reads. Used to estimate genome heterozygosity, repeat content, and size from sequencing reads using a kmer-based statistical approach.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Julien Bane

Software package for single cell RNA-seq data analysis using k-NN graph partitions. Used to analyze group of scRNA profiles that are highly similar and provides features for deriving them. Can be used with large datasets., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous