Curator Dashboard

Software tool for identifying K mAjor cell population groups in single-cell RNA-seq analysis. Algorithm identifying major cell groups that improves differentiating by tuning parameters for clustering. Using multiple datasets improves identification of major cell types and facilitates cell ontology curation.

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• SciCrunch
• 7 years ago - submitted by Mehdi Pirooznia

Software based on deep learning model for auto detect corneal diseases. Sample may contain multiple categories. After learning thousands of corneal images, you can make automatic judgments on subtypes of cornea.

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• RRID-Legacy
• 7 years ago - submitted by Youwen Guo

Software package for metagenomics data. Discovers accurate predictive signatures and provides unprecedented interpretability. Package contains three methods for suppervised learning based on ternary coefficients. Used to discover classification models for quantitative metagenomics data.

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• SciCrunch
• 7 years ago - submitted by Edi Prifti

Software tool to incorporate newly detected repeat overlapping alignments into pairwise alignment chains. It only aligns local genomic regions that are bounded by colinear aligning blocks, as provided in chains, which makes it feasible to consider all seeds including those that overlap repetitive regions. Used to improve genome alignments by incorporating previously undetected local alignments between repetitive sequences.

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• SciCrunch
• 7 years ago - submitted by Ekaterina Osipova

Software tool as graphical user interface designed to assist with manual annotation of different parts of the inflorescence. Used in deep plant phenotyping. Works with DeepPod.

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• SciCrunch
• 7 years ago - submitted by Azam Hamidinekoo

Software tool as preprocessing pipeline for diffusion MRI. Pipeline used for preprocessing of diverse dMRI data. Workflow dispenses of manual intervention, thereby ensuring reproducibility of results.

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• RRID-Legacy
• 7 years ago - submitted by Oscar Esteban

Software package for statistical analysis by SAS Institute Inc, Cary, NC.

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• RRID-Legacy
• 7 years ago - submitted by Bo-Chul SHIN

Software tool for analysis of mass spectrometry imaging data implemented in Galaxy framework. Provides options to analyze mass spectrometry imaging data in imzML file format, including quality control, visualization, preprocessing, statistical analysis, image co-registration and feature identification.Galaxy docker container for mass spectrometry imaging.

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• SciCrunch
• 7 years ago - submitted by Melanie Föll

immunohistochemical staining

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• SciCrunch
• 7 years ago - submitted by Tingting Hu

Mosaic software features apps designed to help you derive deeper insights from videos of large scale circuit dynamics by Inscopix Inc.

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• RRID-Legacy
• 7 years ago - by Anonymous

Miniature microscope for imaging calcium activity in neural circuits by Inscopix, Inc. Allows to record real-time brain cell activity and calcium signaling in deep brain regions while the animal moves freely.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for subject wise networks from morphometric features and structural MRI. Single subject morphometric networks for neuroscience connectivity applications.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for assessment of predictive power, with support for neuroimaging features. Easy machine learning and standardized predictive analysis of biomarkers.

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• RRID-Legacy
• 7 years ago - by Anonymous

Behavior instrument, cage allows for assess to home cage behavior and cognitive performance of up to 16 individual mice or rats separately while they are living in social environment. This unique experimental setup fosters natural social behavior in biologically relevant, enriched but highly standardized home cage context. Minimizes need for handling and human intervention, thereby increasing task validity, data reproducibility and ensuring high level of animal welfare.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

An ontology for describing the complex phenotypes of neurons.

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• dkNET
• 7 years ago - submitted by Maryann Martone

Software tool to create and execute reproducible bioinformatics workflows using drag and drop interface. Graphical widgets represent Docker containers executing modular task. Widgets are linked graphically to build bioinformatics workflows that can be reproducibly deployed across different local and cloud platforms. Each widget contains form-based user interface to facilitate parameter entry and console to display intermediate results.

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• SciCrunch
• 7 years ago - submitted by Ka Yee Yeung

Repository of sequenced antibodies, integrating curated information about antibody and its antigen with cross links to standardized databases of chemical and protein entities. Manually curated repository of sequenced antibodies, developed by Geneva Antibody Facility at University of Geneva, in collaboration with CALIPHO and Swiss Prot groups at SIB Swiss Institute of Bioinformatics. Database provides list of sequenced antibodies with their known targets. Each antibody is assigned unique ID number that can be used in academic publications to increase reproducibility of experiments.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software tool for analysing pathogen genetic diversity and relationships between and within hosts at once, in windows along genome. Inferring transmission from within and between host pathogen genetic diversity.

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• RRID-Legacy
• 7 years ago - by Anonymous

Research study of brain development in infants and children with autism. Consortium of researchers across North America that work together to discover early changes in brain development of young children with autism. Participants will travel to their closest study location to receive developmental and behavioral assessments, MRI scan of the brain. Participants will be reimbursed for travel and related expenses. Families of children at high risk for developing symptoms of autism will receive assistance with referrals for local services. check if data repository is in the papers

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software Python package for coordinate and image based meta analysis of neuroimaging data.

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• SciCrunch
• 7 years ago - by Anonymous