Curator Dashboard

Cloud-based data repository for storing, publishing and accessing scientific data. Mendeley Data creates a permanent location and issues Force 11 compliant citations for uploaded data.

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• RRID-Legacy
• 9 years ago - submitted by Maryann Martone

Project portal for the Human Reference Protein Interactome Project, which aims generate a first reference map of the human protein-protein interactome network by identifying binary protein-protein interactions (PPIs). It achieves this by systematically interrogating all pairwise combinations of predicted human protein-coding genes using proteome-scale technologies.

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• SciCrunch
• 9 years ago - submitted by Daniel Himmelstein

Web-based statistical application that measures correlated rates across a phylogeny, allowing for extraction of genes with similar evolutionary histories. It can identify new functional connections between genes.

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• SciCrunch
• 9 years ago - submitted by Daniel Himmelstein

Medication indication software for primary and secondary uses of electronic medical record (EMR) data. MEDI was created based on multiple commonly used medication resources (RxNorm, MedlinePlus, SIDER 2, and Wikipedia ) and by leveraging both ontology and natural language processing (NLP) techniques.

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• SciCrunch
• 9 years ago - submitted by Daniel Himmelstein

Database of annotations of drug indications in FDA drug labels. LabeledIn contains an expert curated set of indications and a crowdsourced set of indications.

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• SciCrunch
• 9 years ago - submitted by Daniel Himmelstein

Project portal for a collaborative database aiming to provide a comprehensive annotation to human genome.It uses the computable, controlled vocabulary of Disease Ontology (DO) and NCBI Gene Reference Into Function (GeneRIF).

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• SciCrunch
• 9 years ago - submitted by Daniel Himmelstein

Database that integrates evidence on tissue expression from manually curated literature, proteomics and transcriptomics screens, and automatic text mining. It maps all evidence to common protein identifiers and Brenda Tissue Ontology terms, and further unifies it by assigning confidence scores that facilitate comparison of the different types and sources of evidence.

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• SciCrunch
• 9 years ago - submitted by Daniel Himmelstein

Database that integrates evidence on disease-gene associations from automatic text mining, manually curated literature, cancer mutation data, and genome-wide association studies. It also assigns confidence scores that facilitate comparison of the different types and sources of evidence.

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• RRID-Legacy
• 9 years ago - submitted by Daniel Himmelstein

Database of drug information created and maintained by the Division of Translational Informatics at University of New Mexico. It provides information on active ingredients chemical entities, pharmaceutical products, drug mode of action, indications, and pharmacologic action.

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• SciCrunch
• 9 years ago - submitted by Daniel Himmelstein

Data visualization software inspired by Trellis graphics, with an emphasis on multivariate data. Lattice is sufficient for typical graphics needs as well as most nonstandard requirements.

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• RRID-Legacy
• 9 years ago - by Anonymous

Genotype analysis software which enhances the speed, accuracy, and ease of analysis. The software is an alternative to Applied BioSystems Genotyper®, GeneScan®, and other genotype analysis software.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software package implementing various statistical procedures used in psychometry.

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• RRID-Legacy
• 9 years ago - by Anonymous

Data Analysis GUI for R. The program is based on Java's Swing GUI library and includes an Excel-like spreadsheet for easy data viewing and editing.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software package that performs backward selection of fixed effects, forward fitting of the random effects, and post-hoc analysis using parallel capabilities. Other functionality includes the computation of ANOVAs with upper- or lower-bound p-values and R-squared values for each model term, model criticism plots, data trimming on model residuals, and data visualization.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software package that contains miscellaneous functions useful in biostatistics, such as univariate and multivariate testing procedures with a special emphasis on permutation tests. Many functions shorten existing procedures and implement plotting functions that can be used with a variety of methods and packages.

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• RRID-Legacy
• 9 years ago - by Anonymous

Source code of statistical tests for linear mixed effects models as implemented in lme4. The package also provides the calculation of population means for fixed factors with confidence intervals and corresponding plots.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software to fit and compare Gaussian linear and nonlinear mixed-effects models.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software R package. Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue."

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• RRID-Legacy
• 9 years ago - by Anonymous

Software for structure refinement.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Software for x-ray detection and processing single-crystal monochromatic diffraction data recorded by the rotation method. XDS can process data images from CCD-, imaging-plate-, multiwire-, and pixel-detectors in a variety of formats.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski