Curator Dashboard

Simulation environment that combines flexible script language user interface with computational tools in order to setup cardiac electrophysiology in-silico experiments without re-coding at low-level. It aims to include cell excitation, tissue/anatomy models, and stimulation protocols in BeatBox scripts so that simulation run either sequentially or in parallel (MPI) without re-compilation.

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• RRID-Legacy
• 9 years ago - submitted by Irina Biktasheva

Community portal for a distributed data sharing platform and open protocol for building apps. The Dat Project imagines a web of commons created by global communities on open and secure protocols.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Dataset of functionally characterized rice genes and members of different gene families. The dataset was created by integrating data from available databases and reviewing publications of rice functional genomic studies.

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• SciCrunch
• 9 years ago - submitted by Wen Yao

Source code for the Python implementation of the kernel Current Source Density method. The method operates in one-, two-, and three-dimensional space to perform nonparametric estimation of transmembrane current sources from local field potentials recorded from arbitrarily distributed electrodes.

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• RRID-Legacy
• 9 years ago - submitted by Daniel Wójcik

Software for metabarcoding of DNA. SOAPBarcode takes advantage of high throughput capacity of next-generation-sequencing (NGS) platforms and can characterize the biodiversity of large volumes of eukaryote samples.

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• SciCrunch
• 9 years ago - by Anonymous

Software for cluster analysis of microarray data. Genesis is a platform independent Java package of tools to simultaneously visualize and analyze a whole set of gene expression experiments.

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• RRID-Legacy
• 9 years ago - by Anonymous

Perl software for transcription factor binding site detection and analysis. It implements classes for the representation of objects encountered in analysis of these protein-binding sites.

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• SciCrunch
• 9 years ago - by Anonymous

Software for digital video camera recording that allows users to control and acquire dadta from multiple cameras simultaneously in a singleuser interface. StreamPix provides a complete management console for cameras, simplifying the setup, control and acquisition from any number and type of camera.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software for read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC). Sim3C's potential applications include addressing questions directed at the spatial organization of DNA in samples of eukaryotic tissue, single cells, and microbial communities.

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• SciCrunch
• 9 years ago - submitted by Matthew DeMaere

Imaging software that works with G:BOX Chemi and PXi imaging systems to automatically or manually capture images. GeneSys also includes a database containing information about applications such as fluorescence, chemiluminescence and chemifluorescence.

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• RRID-Legacy
• 9 years ago - by Anonymous

Long-term study of brain development and child health in the United States. The study tracks subjects' biological and behavioral development through adolescence into young adulthood to determine how childhood experiences (such as sports, videogames, social media, unhealthy sleep patterns, and smoking) interact with each other and with a child’s changing biology to affect brain development and social, behavioral, academic, health, and other outcomes.

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• SciCrunch
• 9 years ago - submitted by Anita Bandrowski

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 6,2026. Platform for mediation and integration of schizophrenia neuroimaging-related databases. It provides access to federated databases, novel mediation software, and large-scale data-sharing features.

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• SciCrunch
• 9 years ago - submitted by Yueling Li

Software for identifying associations between host genetic variation and microbiome composition. HOMINID is a computational approach based on Lasso linear regression, that given host genetic variation and microbiome taxonomic composition data, identifies host SNPs that are correlated with microbial taxa abundances.

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• SciCrunch
• 9 years ago - submitted by Ran Blekhman

Language standard for automating English language protocols. Autoprotocol specifies experimental protocols for biological research as a way to define experiments that could be run over the internet on remote robotic automation.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Protocol repository for microfluidics experiments and chips. METAFLUIDICS provides a home for digital design files and other information necessary to reproduce or remix a microfluidic device.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Robot with open source software that allows for configurable robotic science. The robot's primary function is automating pipette functions in biological research in order to save time for research labs.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Software language for methods to simplify protocols into reusable components that can be exchanged or removed to produce simple, reproducible, and scalable workflows. It allows users to develop, execute, and analyse biological experiments faster, while also introducing standardization and modularity to bioengineering.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Workflow software and methods language to improve the reproducibility of research results in the scientific community. The Aquarium Project aims to provide the means to specify, as precisely as possible, how to obtain a result using a combination of formal statements, informal descriptions, and photographs.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Cloud-based framework that allows users to estimate the age of individual subjects using cortical thickness maps derived from their own locally processed T1-weighted whole brain MRI scans. The provided age prediction models were trained using (i) relevance vector machines and (ii) Gaussian processes machine learning methods applied to cortical thickness surfaces obtained using Freesurfer v5.3.

• RRID-Legacy
• 9 years ago - submitted by David Kennedy

Software toolkit for atomistic simulations to explore how carbohydrates function. Applications include the preparation of structures for glycolipids, nanocellulose, and glycans linked to glycoproteins.

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• SciCrunch
• 9 years ago - submitted by Fabio Lolicato