Curator Dashboard

Platform for reproducible research. Code base for publishing data. For merging science and cyberinfrastructure pathways. Data Infrastructure Building Block (DIBBS) initiative to build scalable, open source, web-based, multi-user platform for reproducible research enabling creation, publication, and execution of tales – executable research objects that capture data, code, and complete software environment used to produce research findings. To enable researchers to define and create computational environment to manage complete conduct of computational experiments and expose them for analysis and reproducibility.

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• SciCrunch
• 7 years ago - submitted by Anita Bandrowski

To identify role of pharmacokinetic and pharmacodynamic gene variation in nicotine dependence phenotypes, with focus on prospective smoking cessation and medication response.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Project to facilitate primate research by enabling neuroscience researchers to access collections either on-site or via the web for use in their own research programs. Collections of macaque brain tissue available to investigators worldwide to provide cost effective means for researchers to conduct de novo studies on non-human primate brain.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Nonhuman Primate reference transcriptome resource consisting of deep sequencing complete transcriptomes (RNA-seq) from multiple NHP species.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Atlases enable alignment of individual scans to improve localization and statistical power of results, and allow comparison of results between studies and institutions. Set of multi subject atlas templates is constructed specifically for functional and structural imaging studies of rhesus macaque.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Software Python package to automate building of ML pipelines by combining flexible expression tree representation of pipelines with stochastic search algorithms such as genetic programming.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Software Python package to automate building of ML pipelines by combining flexible expression tree representation of pipelines with stochastic search algorithms such as genetic programming.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Portal provides access to data and web based applications created for benefit of global research community by Allen Institute for Brain Science. Projects to ombine genomics with neuroanatomy by creating gene expression maps for mouse and human brain. Mouse Brain Atlas, Human Brain Atlas, Developing Mouse Brain Atlas, Developing Human Brain Atlas, Mouse Connectivity Atlas, Non-Human Primate Atlas, and Mouse Spinal Cord Atlas and three related projects Glioblastoma, Mouse Diversity, and Sleep data banks, are used to advance various fields of science especially in neurobiological diseases.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Collection of gene expression information during mouse development in MGI. GXD has developed RNA-Seq and Microarray Experiment Search to find specific mouse expression studies in ArrayExpress and GEO. Based on standardized metadata annotations, users can specify age, anatomical structure, mutant alleles, strain and sex of samples of interest as well as experiment study type and key parameters.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Knockout Mouse Phenotyping Project, JAX information about their contributions to KOMP2 project. Project to generate and phenotype single gene KO mouse strains from KOMP ES cell lines. Strains are phenotyped using protocols in pipeline designed by International Mouse Phenotyping Consortium. There are three NIH-funded phenotyping centers in United States: JAX, BaSH Consortium (Baylor College of Medicine, the Wellcome Trust Sanger Institute and MRC Harwell), and the DTCC Consortium (University of California at Davis, the Toronto Center for Phenogenomics, Children’s Hospital Oakland Research Institute (CHORI) and Charles River ).

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Project focused on generating targeted knockout mutations in mouse ES cells. Second phase, KOMP2, relies upon successful generation of strains of knockout mice from these ES cells. Information from JAX about their contributions to KOMP project.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Digital atlas of gene expression patterns in developing and adult mouse. Several reference atlases are also available through this site. Expression patterns are determined by non-radioactive in situ hybridization on serial tissue sections. Sections are available from several developmental ages: E10.5, E14.5 (whole embryos), E15.5, P7 and P56 (brains only). To retrieve expression patterns, search by gene name, site of expression, GenBank accession number or sequence homology. For viewing expression patterns, GenePaint.org features virtual microscope tool that enables zooming into images down to cellular resolution.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Genome Browser for study of 3D genome organization and gene regulation and data visualization. Used to visualizing chromatin interaction data, browse other omics data such as ChIP-Seq or RNA-Seq for same genomic region, and gain complete view of both regulatory landscape and 3D genome structure for any given gene., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Searchable database of mouse genes, DNA segments, cytogenetic markers and QTLs. MGI provides access to integrated data on mouse genes and genome features, from sequences and genomic maps to gene expression and disease models.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Enables comparative phenotype analysis, searches for human disease models, and hypothesis generation by providing access to spontaneous, induced, and genetically engineered mutations and their strain-specific phenotypes.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Collection of published and potential mouse models of human disease, discovery of candidate genes and investigation of phenotypic similarity between mouse models and human patients. Mouse mutation, and phenotype and disease model data from Mouse Genome Informatics database are integrated with human gene to disease relationships from the National Center for Biotechnology Information and Online Mendelian Inheritance in Man and human disease to phenotype relationships from the Human Phenotype Ontology.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Platform that can be used to annotate, prioritize, visualize and interpret GWAS results. To submit your own GWAS, login is required for security reason. You can browse public results of FUMA from Browse Public Results without registration or login.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Curated data about all recombinase-containing transgenes and knock-ins developed in mice providing a comprehensive resource delineating known activity patterns and allows users to find relevant mouse resources for their studies.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

MGI GO project provides functional annotations for mouse gene products using Gene Ontology. Functional annotation using Gene Ontology (GO).

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

MGI integrates comparative data on inbred strain characteristics including SNPs, polymorphisms, and quantitative phenotypes.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger