Curator Dashboard

Public, NIH-funded repository and analysis ecosystem for brain microscopy data, designed to store, share, and process massive volumetric datasets. It enables researchers to access whole-brain images, neuron morphologies, and spatial data without needing to download, fostering collaborative discovery. Used to deposit, analyze, mine, share and interact with large brain image datasets.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software JAVA based application for basic analysis of Small Angle X-ray Scattering datasets.

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• RRID-Legacy
• 7 years ago - submitted by Lori Buetow

Software package to arrange multiple heatmaps and support various annotation graphics. Used to visualize associations between different sources of data sets and to reveal potential patterns.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web server for computing theoretical scattering profile of structure and fitting of experimental profile. Computes SAXS profile of given atomistic model and fits it to experimental profile. Used for structural modeling applications with small angle X-ray scattering data.

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• RRID-Legacy
• 7 years ago - submitted by Lori Buetow

Donkey polyclonal Secondary Antibody to Goat IgG used for immunostaining

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• SciCrunch
• 7 years ago - submitted by Reece Sophocleous

Searchable table of datasets. Data generated from projects through BRAIN Initiative Cell Census Network. Datasets can be filtered by species, research investigator, grant number or experimental technique. Includes links to data directories at data archives and links to protocols.

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• SciCrunch
• 7 years ago - submitted by Maryann Martone

Part of BRAIN Initiative Cell Census Network of integrated centers and laboratories. BCDC makes all regularly released data available to public. Provides reference of diverse cell types in human, mouse, and marmoset brain.

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• SciCrunch
• 7 years ago - submitted by Maryann Martone

Software pangenomics toolbox for clustering diverged orthologues in bacteria. Used to identify and classify orthologous gene families in bacterial pangenomes over wide range of sequence similarity thresholds.

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• SciCrunch
• 7 years ago - submitted by Sion Bayliss

Consortium to bring together clinicians, pathologists, researchers, and biotech innovators to create scalable network of stakeholders interested in helping patients with glomerular kidney disease. Makes collective expertise of its members available for discussion of individual cases, provides infrastructure for biomarker studies, enables genomic research, and facilitates clinical trials.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Software tool that combines steps of image processing, non rigid image registration, and spot localisation. Performs registration of 3D imaging data and localization of spots, active synapses in light microscopy images, in semi automatic mode with graphical user interface.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software package for statistical estimation of haplotype phase either within a genotyped cohort or using a phased reference panel in large scale sequencing. The package includes Eagle1 (to harness identity-by-descent among distant relatives to rapidly call phase using a fast scoring approach) and Eagle2 (to analyze a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software tool for accurate annotation and quantification of microRNAs and their isomiRs from small RNA-sequencing data. Provides information on quality of sequencing data, genome mapping statistics, abundance of other types of small RNAs such as tDRs and yDRs, prevalence of post transcriptional modifications.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software R package for performing graph theory analyses of brain MRI data.

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• NIF
• 7 years ago - by Anonymous

Open source software tool to provide template for command line bioinformatics tools in various programming languages. Program reads one or more input FASTA files, computes variety of statistics on each file, and prints tabulated output. Used as basis for learning and as foundation for starting new projects.

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• SciCrunch
• 7 years ago - by Anonymous

Software platform used for production of animations, rich Internet applications, desktop applications, mobile applications, mobile games and embedded web browser video players. Adobe will stop updating and distributing Flash Player in 2020. For existing Flash content, eventual, final version of Flash plug-in will still work after 2020, and Adobe will work with browser makers to ensure security vulnerabilities are patched.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software R package for analysis of single cell RNA-seq expression, normalization and differential expression data. Provides framework to perform cell and gene filtering, quality control, normalization, dimension reduction, clustering, differential expression, and visualization functions.

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• SciCrunch
• 7 years ago - submitted by Joseph powell

Software tool for folding RNA secondary structures, including two limited classes of pseudoknots. Performs abstract shape analysis for structures holding pseudoknots up to complexity of kissing hairpin motifs. Successor of pknotsRG. Used for secondary structure prediction including kissing hairpin motifs.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software validation tool that checks submitted folder structure for compliance to BIDS data standard. Validates Brain Imaging Data Structure.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software tool as stochastic algorithm for estimating maximum likelihood phylogenies. Used for phylogenomic inference.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web server for RNA secondary structure prediction. Predicts RNA secondary structure from RNA sequence. Based on generalized centroid estimator.

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• RRID-Legacy
• 7 years ago - by Anonymous