Curator Dashboard

Project that aims to standardize Hemoglobin A1c test results to those of the Diabetes Control and Complications Trial (DCCT) and United Kingdom Prospective Diabetes Study (UKPDS) which established the direct relationships between HbA1c levels and outcome risks in patients with diabetes.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Algorithm for measuring pairwise neuronal similarity. NBLAST considers both position and local geometry and works by decomposing a query and target neuron into short segments; matched segment pairs are scored using a log-likelihood ratio scoring matrix empirically defined by the statistics of real matches and non-matches.

• Resource
• SciCrunch
• 9 years ago - submitted by Devon Gilpatrick

Research project that aims to learn more about the number of people who have monogenic diabetes, why and how it happens, and how best to treat it. Any adult or child with a known genetic cause of diabetes may join the MODY Registry.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Web application to perform automated model construction and genome annotation for large-scale metabolic networks. Platform for accessing, analyzing and manipulating genome-scale metabolic networks (GSM) as well as biochemical pathways.

• Resource
• SciCrunch
• 9 years ago - by Anonymous

Project that aims to provide a collection of Gold Standard gene phylogenies to the scientific community. This set of reference gene trees is suitable for phylogenomic databases to assess their current quality status, measure changes following new database releases and diagnose improvements subsequent to an upgrade of the analysis procedure.

• Resource
• SciCrunch
• 9 years ago - by Anonymous

Software for scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Canu is a fork of the Celera Assembler and is designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).

• Resource
• SciCrunch
• 9 years ago - by Anonymous

Software toolkit for analyzing nanopore sequence data.

• Resource
• SciCrunch
• 9 years ago - by Anonymous

Software that analyzes intestinal microbiota data. This environment is composed of a framework to process and analyze microbiota data from raw sequences to taxonomic and functional assignations.

• Resource
• SciCrunch
• 9 years ago - submitted by Bérénice Batut

Brain-CODE is a large-scale informatics platform that manages the acquisition and storage of multidimensional data collected from participants with a variety of brain disorders.

• Resource
• NIF
• 9 years ago - by Anonymous

Source code for processing continuous local field potentials (LFP). The interface implements different documented algorithms for HFO detection, and provides several tools for signal visualization and manipulation.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous

Software toolkit designed to build, test and package software. CMake is used to control the software compilation process using simple platform and compiler independent configuration files, and generate native makefiles and workspaces that can be used in the compiler environment of your choice.

• Resource
• SciCrunch
• 9 years ago - submitted by Isabella Froman

Algorithm for MATLAB and the EEGLAB toolbox that enables the automatic detection of independent components from an ICA that represent event-related brain potentials. It performs automatic Independent Component (IC) selection with respect to the contributions of the ICs to a certain ERP.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous

Python software package that offers quantitative PET image reconstruction and analysis with high accuracy and precision. It is written in CUDA C and embedded in Python C extensions.

• RRID-Legacy
• 9 years ago - submitted by David Kennedy

Software for 3D/4D image reconstruction. UCSF ChimeraX is the next-generation molecular visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous

Software package to elucidate complex interactions between subsets of neuroanatomical features and subsets of cognitive features. briancog specializes in differential correlation analysis.

• RRID-Legacy
• 9 years ago - submitted by David Kennedy

Software that is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

• Resource
• SciCrunch
• 9 years ago - submitted by Michael Li

Framework for spike sorting that includes tools for pre-processing, spike detection, spike sorting, and sorting quality evaluation. It is principally designed for sorting of single-wire microwire recordings in humans, but is being used for other types of recordings as well.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous

Artificial intelligence image analysis platform that facilitates life science research. It offers data analysis, processing functions, and security features to accelerate research productivity.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous

Biobank for reagents such as antibodies, mice, and cell lines. Ximbio aims to maximise scientists' commercial opportunities and encourage the sharing of tools and information among the research community.

• Resource
• RRID-Legacy
• 9 years ago - submitted by Mason Pairish

Software for a de novo OTU-picking pipeline integrating single- and paired-end 16S sequence tags. It is designed to take Illumina paired-end sequencing reads as input and output the OTU BIOM table, together with their representative sequences and a phylogenetic tree of OTUs.

• Resource
• SciCrunch
• 9 years ago - submitted by Xianfeng Chen