Curator Dashboard

Software package for using multi locus genotype data to investigate population structure. Used for inferring presence of distinct populations, assigning individuals to populations, studying hybrid zones, identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals are migrants or admixed. Can be applied to most of commonly used genetic markers, including SNPS, microsatellites, RFLPs and Amplified Fragment Length Polymorphisms.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web based program for collating results generated by program STRUCTURE. Provides assess and visualize likelihood values across multiple values of K and hundreds of iterations for easier detection of number of genetic groups that best fit data. Reformats data for use in downstream programs, such as CLUMPP.It is complement for using software Structure in genetics population. Website and program for visualizing STRUCTURE output and implementing Evanno method., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Rabbit polyclonal antibody against GAPDH. Provider: Yeason, Cat#30202ES40

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• SciCrunch
• 7 years ago - submitted by Xiaoling Jiang

24 channel mobile electroencephalographic recording system. Supports synchronization with other sensors and simultaneous multi amplifier streaming via labstreaming layer. Wearable device that features motion sensors so body and head movements can be detected.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool that uses long reads to enhance genome assembly. Fast and accurate gap closing software tool that uses low coverage of error-prone long reads generated by third generation sequence techniques (Pacbio, Oxford Nanopore, etc.) or preassembled contigs for large genomes.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software for organizing and analyzing blot and gel images captured on iBright Imaging Systems. Available as desktop version PC and Mac OS compatible and cloud-based version accessible via web browser through Connect platform.

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• RRID-Legacy
• 7 years ago - by Anonymous

System for unified collection of measurement time series in research experiments that handles networking, time synchronization, near real time access as well as optionally centralized collection, viewing and disk recording of data. System for synchronizing streaming data for live analysis or recording.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Strategy guide for HED Annotation. Framework for systematically describing laboratory and real world events.HED tags are comma separated path strings. Organized in forest of groups with roots Event, Item, Sensory presentation, Attribute, Action, Participant, Experiment context, and Paradigm. Used for preparing brain imaging data for automated analysis and meta analysis. Applied to brain imaging EEG, MEG, fNIRS, multimodal mobile brain or body imaging, ECG, EMG, GSR, or behavioral data. Part of Brain Imaging Data Structure standard for brain imaging.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software toolbox for neuroscientist data (EEG and reaction time for time being). Used to create shared language among different algorithms and softwares in this field (e.g. Fieldtrip, Eeglab, Chronux, Brainstorm, etc), in order to facilitate implementation of experimental analysis by users. Code and scripts for EEG analysis for MATLAB.

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• RRID-Legacy
• 7 years ago - submitted by Pablo Billeke

Miniaturized microscope that allows imaging from two brain regions. Integrates inertial measurement unit (IMU) and optogenetic LED driver. Used to perform dual miniscope recordings in multiple configurations and works with cross-platform software enabling operation on MSWindows, MacOS and Linux.

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• RRID-Legacy
• 7 years ago - submitted by Tycho Hoogland

Public research university in Los Angeles. It became Southern Branch of University of California in 1919, making it fourth-oldest of 10-campus University of California system and oldest of campuses in Southern California.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Open source web application that tracks progress of jobs submitted to remote servers using Sun Grid Engine (SGE) on-demand scheduling system. Allows remote scheduling of pre-defined pipelines, as well as re-scheduling queued jobs. Telescope does not assume anything from the remote server, except for SSH connection. The connection is established using SSH key pairs that are stored after encrypted.

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• SciCrunch
• 7 years ago - submitted by Jaqueline Brito

Software tool to identify errors in genome assemblies without need for reference sequence. Can be used in any stage of assembly pipeline to automatically break incorrect scaffolds and flag other errors in assembly for manual inspection. Reports mis-assemblies and other warnings, and produces new broken assembly based on error calls.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for computing genome assembly likelihoods.Computes likelihood of reads with respect to assembly and statistical model which can be used as metric for evaluating assemblies. Novel likelihood based approach to assembly assessment in absence of ground truth.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software package for identification of long terminal repeat retrotransposons (LTR-RTs). Removes false positives from initial software predictions. Achieves very high specificity, accuracy, and precision without significantly sacrificing sensitivity, hence significantly outperforming existing methods. Can construct LTR libraries directly from self-corrected PacBio reads prior to genome assembly.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as de novo assembler for PacBio and Oxford Nanopore data. It produces assembly from all-vs-all raw read alignments without error correction stage. Allows to read overlapping, rescue missing overlaps, identify low-quality regions and chimaera and produce better consensus.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software set of tools that facilitate overlapping, patching, correction and assembly of noisy long reads.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as long read mapper designed to align PacBio or Oxford Nanopore reads to reference genome and optimized for structural variation detection.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as structural variation caller using third generation sequencing (PacBio or Oxford Nanopore). It detects all types of SVs (10bp+) using evidence from split-read alignments, high-mismatch regions, and coverage analysis. Used to avoid single molecule long read sequencing high error rates.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as modular command line solution for visualisation, quality control and taxonomic partitioning of genome datasets. Used for interrogation of genome assemblies. Assists in primary partitioning of data, leading to improved assemblies, and screening of final assemblies for potential contaminants.

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• RRID-Legacy
• 7 years ago - by Anonymous