Curator Dashboard

Human miRNA tissue atlas. Database showing distribution of miRNA expression across human tissues.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to correct for batch effects in single-cell expression data using fast version of mutual nearest neighbors (MNN) method.

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• RRID-Legacy
• 7 years ago - by Anonymous

Data analysis and 3D visualization for connectomics and serial electron microscopy. This toolbox provides missing 3D visualization and analysis tools for cylinder-based annotations. Integration with contour, skeleton based annotations and common morphology file formats is also supported.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

AKT1/2/3

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• RRID-Legacy
• 7 years ago - submitted by ting wang

Companion analytical software for Neurolucida and Neurolucida 360, designed to perform extensive morphometric analysis on neuron reconstructions, serial section reconstructions, and brain maps.

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• SciCrunch
• 7 years ago - submitted by Maci Heal

Companion analysis software to Vesselucida 360 for vasculature-specific metrics such as segment and nodes count, frequency of anastomoses, vessel surface and volume. Insufficient metadata, waithig for a letter from submitter

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• SciCrunch
• 7 years ago - submitted by Maci Heal

Software for automatic identification and delineation of brain regions within experimental mouse brain sections. NeuroInfo registers serial section images of any orientation to Allen Mouse Brain Atlas, corrects for distortion due to histological processing, delineates anatomies in experimental section, and detects and reports on cell number within selected anatomies.

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• SciCrunch
• 7 years ago - submitted by Maci Heal

Software as set of commandline tools with GUI frontend that performs data reconstruction and fiber tracking on diffusion MR images. It does preparation work for TrackVis. Software Package for diffusion imaging data processing and tractography.

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• SciCrunch
• 7 years ago - by Anonymous

Software tool as set of analysis pipelines that process chromium single cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis by 10xGenomics.

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• SciCrunch
• 7 years ago - by Anonymous

Software R package for analysis of phylogenetics and evolution. Environment for modern phylogenetics and evolutionary analyses in R.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for multimodal human brain imaging data analysis. Computational pipeline for discovery science of human brain connectomes at macroscale with multimodal magnetic resonance imaging technologies.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software as open source, multiplatform tool used to segment structures in 3D medical images.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as open source medical image viewer. Enables to browse and visualize medical imaging libraries.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software R package as search tool for single cell RNA-seq data by gene lists. Builds index from scRNA-seq datasets which organizes information in suitable and compact manner so that datasets can be very efficiently searched for either cells or cell types in which given list of genes is expressed.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for unsupervised projection of single cell RNA-seq data. Used for projecting cells from scRNA-seq data set onto cell types or individual cells from other experiments.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software package for graphical visualization of organellar genomes. Converts annotations in GenBank format into graphical maps. Used to create visual representations of circular and linear annotated genome sequences provided as GenBank files or accession numbers.

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• SciCrunch
• 7 years ago - submitted by Chao Cheng

Software tool for rapid and accurate annotation of organelle genomes, in particular chloroplast genomes.

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• SciCrunch
• 7 years ago - submitted by Chao Cheng

Software package as de novo assembler and heteroplasmy variance caller for short circular genomes. Used for de novo assembly of organelle genomes from whole genome data.

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• SciCrunch
• 7 years ago - submitted by Chao Cheng

Software tool for automated removal of spurious sequences or poorly aligned regions from multiple sequence alignment. Software package for automated alignment trimming in large scale phylogenetic analyses.

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• SciCrunch
• 7 years ago - submitted by Chao Cheng

Software tool for analyzing repetitive DNA found in genome sequences. Software package for identification and classification of genomic repeats. Used for identifying patterns of local alignments induced by certain classes of repeats.

• Resource
• SciCrunch
• 7 years ago - submitted by Chao Cheng