Curator Dashboard

Facility features 7 state of the art high field NMR instruments ranging from 400 to 600 MHz. The facility provides a diverse selection of probes including room temperature, LN2 cooled probes, 10mm Polymer probes, Diffusion and Solid-State NMR probes. The entire suite of 1D, 2D, Diffusion and Solid-State NMR capabilities are available for a broad range of nuclei.

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• SciCrunch
• 10 months ago - submitted by Edyta Vieth

Core provides data-related support to cancer researchers by offering services like study design consultation, data management, programming, and access to patient data. Its purpose is to help researchers develop and execute studies, manage data, analyze results, and ultimately accelerate cancer research by making large, complex datasets more accessible and usable. CDS team uses evidence-based standards and effective quality assurance procedures from project design to study end. All CDS study staff are HIPAA-compliant and certified in Human Subjects and Good Clinic Practice training.

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• 10 months ago - submitted by Cassie Sather

Core provides services including Geospatial Data Technology and Analysis, Epidemiological Information about the Catchment Area, Cancer Outcomes Data and Analysis.

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• 10 months ago - by Anonymous

Core provides services including consultation on research design, training on interviewing, grant development, conducting focus groups, data analysis.

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• 10 months ago - by Anonymous

Core provides services for comprehensive genetic and genomic analysis of NHPs, including DNA sequencing, nucleic acid extraction, macaque-specific genotyping assays, and NHP DNA Bank distribution services.

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• 10 months ago - by Anonymous

Core is equipped with suite of cryostats and measurement systems for probing electrical, magnetic, and quantum properties at cryogenic temperatures. Sample preparation capabilities include tools for wafer processing, nanomaterial transfer, and inert atmosphere handling. Deposition systems support thin film growth and surface treatment using a variety of techniques. Wirebonding and related sample preparation tools enable precise device packaging and integration, supporting a broad range of experimental workflows in quantum and nanoscale science.

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• 10 months ago - by Anonymous

Software pipeline for complete analysis of bacterial genomes.

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• 10 months ago - by Anonymous

Software R package to facilitate proteogenomics studies. Houses functions to create customized protein databases based on user-submitted genomic variants, splice-junctions, fusion genes and manual transcript sequences. Used to generate protein variant sequences based on imported mutations from VCF, MAF and additional files to generate protein-variant database for use in proteogenomics studies.

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• 10 months ago - submitted by Harmen van de Werken

Clinical Research Coordinator Core is available to support and collaborate with investigators and their research teams in all phases of clinical research, providing services that include assisting with the organization, implementation and completion of clinical research studies.

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• SciCrunch
• 10 months ago - submitted by Edyta Vieth

Facility maintains and administers the chip high performance computing cluster. The chip cluster is built from more than 150 machines featuring Intel CPUs and NVIDIA GPUs.

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• 10 months ago - by Anonymous

Software multi-user server for Jupyter notebooks.

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• 10 months ago - by Anonymous

Automatic Magnetic Bead Cell Isolation System. Benchtop instrument for the purification and extraction of DNA, RNA, proteins, and cells in laboratory settings. It uses magnetic particle technology to handle medium to high throughput processing of 24 or 96 samples per run, providing a more efficient and consistent alternative to manual methods.

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• 10 months ago - by Anonymous

Software R package used to conduct comparative analyses on phylogenetic data sets.

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• 10 months ago - by Anonymous

Software tool that reverts normalised single-cell omics data to raw counts, preserving the integrity of the original measurements and ensuring consistent data processing during integration. Denormalization tool for single-cell transcriptomics data.

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• 10 months ago - submitted by Yin Huang

Core Facility provides infrastructure for high-performance computing and data storage (local and cloud). Services include access and training for use of high-performance computing resources, data analysis and visualization, data integration, statistical analysis, and image analysis.

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• RRID
• 10 months ago - submitted by Noah Fahlgren

Core has built technology toolbox with access to and application of novel and existing methods in multitude of genomics technologies. These capabilities span bulk, single-cell, spatial, and in situ genomic sequencing methods, all of which are leveraged to generate complementary cross-platform, orthogonally validated datasets to foster novel discovery and advance clinical applicability using human cohorts and model systems

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• SciCrunch
• 10 months ago - submitted by Edyta Vieth

Core provides team of experts in the characterization of immune profiles and treatment responses across a diverse range of diseases, such as cancer, autoimmunity, allergy, and neuro-immune disorders. Offers equipment in the field for research at Genomic, cellular and proteomic analysis. Develops assays to balance innovation with protocols and operating procedures to ensure data quality and reproducibility.

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• SciCrunch
• 10 months ago - submitted by Edyta Vieth

Core Facility at the Icahn Genomics Institute (IGI) offers custom-made lipid nanoparticles and RNA technology to develop new therapeutics and nanomedicines.

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• SciCrunch
• 10 months ago - submitted by Edyta Vieth

Software tool to convert FastA and Eggnog-mapper annotation files to GenBank files containing GO terms and EC number annotations, suitable for metabolic network reconstruction using Pathway Tools. Used for creation of genbank files from Eggnog-mapper annotation outputs.

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• 10 months ago - by Anonymous

Software pipeline as open-source, cloud-optimized workflow for processing spatial transcriptomics data. It supports data derived from spatially barcoded sequencing technologies, including Slide-tags-based single-molecule profiling. The pipeline processes raw sequencing data into spatially resolved gene expression matrices, ensuring accurate alignment, spatial positioning, and quantification.

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• 10 months ago - submitted by Nikelle Mirabito