Curator Dashboard

Open source web application that allows biomedical research institutions to map their data and data flows in accordance with GDPR's accountability requirement.

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• SciCrunch
• 7 years ago - by Anonymous

Software tool to uniformly process and normalize large amounts of data. Harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.

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• SciCrunch
• 7 years ago - submitted by Deepa Prasad

Software tool as deep neural network for predicting FreeSurfer segmentations of structural MRI volumes. This tool is implemented as both Docker and Singularity containers. Used for brain parcellation and uncertainty estimation.

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• NIF
• 7 years ago - by Anonymous

Portal to facilitate integration and computing on and across large datasets generated by NHGRI programs, as well as initiatives funded by National Institutes of Health or by other agencies that support human genomics research. Resource for genomic scientific community, that leverages cloud based infrastructure for democratizing genomic data access, sharing and computing across large genomic, and genomic related data sets. Component of federated data ecosystem, and is expected to collaborate and integrate with other genomic data resources through adoption of FAIR (Findable, Accessible, Interoperable, Reusable) principles, as their specifications emerge from scientific community. Will provide collaborative environment, where datasets and analysis workflows can be shared within consortium and be prepared for public release to broad scientific community through AnVIL user interfaces.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Consortium to design and conduct pilot and feasibility studies of novel therapies to reduce morbidity and mortality for patients treated with maintenance hemodialysis. Data Coordinating Center (DCC) for consortium provides scientific expertise and operational support for pilot studies that will be conducted at HDPSC Participating Clinical Centers. Data Coordinating Center for Hemodialysis Pilot Studies Consortium.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Portal for visualization and analysis of multi omic data in public and private domains. Enables upload, visualization and analysis of scRNA-seq data.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software tool as processing code. Alternating direction method of multipliers (ADMM) algorithm for recovering 3D volumes from 2D raw data captured with DiffuserCam.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Cloud based analysis software for cell population microscopy images. Network Analysis of Cell Communities cytoNet image analysis software designed to quantify structure of cell communities from microscope images, using principles of graph theory.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software tool for neuronal recording in intact brain.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software tool for automatic localization of intra-cranial electrodes for clinical and high density grids. Software for coregistering high density ECoG grids to MRI anatomy.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software Python tool for low dimensional analysis of single-cell RNA-Seq data. Software package for two dimensional visualization of single cell data. Analyzes gene expression matrix and produces output report in which two-dimensional of data can be explored.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

NIH BRAIN Initiative Funding Opportunities, Integrated and Quantitative Approaches to Understanding Circuits.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software tool to automate sequencing center operations. This pack provides re-usable units for automating tasks at sequencing core facility using StackStorm event-driven automation platform.

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• SciCrunch
• 7 years ago - submitted by Johan Dahlberg

Template document to be used for agreements between device manufacturers and academic research institutions to form partnerships for submission of grant applications to the NIH for clinical research.

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• SciCrunch
• 7 years ago - submitted by Ethan Badger

Methods for reconstructing transcriptional regulatory networks.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software tool to facilitate tractography based deep brain stimulation (DBS) electrode targeting within patient specific stereotactic coordinate system used in operating room.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software for use with compact Acousto-Optic Lens Microscope (AOLM) developed in the Silver Lab at UCL. Written in LabVIEW. Performs multiple imaging modes and protocols including Z-stacks, multi-plane, single-plane, sub-volume, patches and points. It comes with tools for visualising data acquired with system.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Analysis and modeling code for waves of seizure activity.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Two photon microscope control software with multi area capabilities.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Python Rayleigh-Sommerfeld integral for acoustics with optional CUDA graphics processing unit (GPU) implementation.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth