Curator Dashboard

Atlas providing structure and development of Drosophila brain lineages. Used to learn about projection pattern of lineages as first step towards reconstructing and understanding all neurons.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Collection of color illustrations that follow main events of embryogenesis and post embryonic development of Drosophila.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Consortium integrates resources from variety of research groups, from model organisms to protein databases to biological research communities actively involved in development and implementation of Gene Ontology. Mission to develop up to date, comprehensive, computational model of biological systems, from molecular level to larger pathways, cellular and organism level systems.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Model organism database that serves as central repository and web-based resource for zebrafish genetic, genomic, phenotypic and developmental data. Data represented are derived from three primary sources: curation of zebrafish publications, individual research laboratories and collaborations with bioinformatics organizations. Data formats include text, images and graphical representations.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Database of the zebrafish genome.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Browser to interactively visualize genomic data. Provides reference sequences and working draft assemblies for large collection of genomes and access to ENCODE and Neanderthal projects.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Portal provides list of genetic resources such as Brain Atlases and genomes for various species provided by National Institute of Drug Abuse.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Portal of PsychENCODE Consortium to study role of rare genetic variants involved in several psychiatric disorders. Database of regulatory elements, epigenetic modifications, RNA and protein in brain.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Collection of transcription factor microRNA regulations. TransmiR v2.0 manually curated TF-miRNA regulations from publications during 2013-2017 and included ChIP-seq-derived TF-miRNA regulation data.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Software tool for analysis of expression data for microRNA function.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Central online repository for microRNA nomenclature, sequence data, annotation and target prediction.Collection of published miRNA sequences and annotation.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Comprehensive resource of microRNA target predictions and expression profiles. Used for whole genome prediction of miRNA target genes. For each miRNA, target genes are selected on basis of sequence complementarity using position weighted local alignment algorithm, free energies of RNA-RNA duplexes, and conservation of target sites in related genomes. Provides information about set of genes potentially regulated by particular microRNA, co-occurrence of predicted target sites for multiple microRNAs in mRNA and microRNA expression profiles in tissues. Users are allowed to customize algorithm, numerical parameters, and position-specific rules., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Web tool for integrating human and mouse microRNAs in pathways.Pathway analysis web-server, providing statistics, while being able to accommodate advanced pipelines. Web server for assessment of miRNA regulatory roles and identification of controlled pathways. Supports all analyses for KEGG molecular pathways and Gene Ontology (GO) in seven species (Homo sapiens, Mus musculus, Rattus norvegicus, Drosophila melanogaster, Caenorhabditis elegans, Gallus gallus and Danio rerio).DIANA miRPath v.2.0 includes investigating combinatorial effect of microRNAs in pathways.DIANA-miRPath v3.0 includes deciphering microRNA function with experimental support.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Collection of epigenetic data browsers and repositories. Repository of epigenetics tools and databases by EpiGenie team.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Encyclopedia of DNA elements consisting of list of functional elements in human genome, including elements that act at protein and RNA levels, and regulatory elements that control cells and circumstances in which gene is active. Enables scientific and medical communities to interpret role of human genome in biology and disease. Provides identification of common cell types to facilitate integrative analysis and new experimental technologies based on high-throughput sequencing. Genome Browser containing ENCODE and Epigenomics Roadmap data. Data are available for entire human genome.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Portal for epigenomic information on range of human tissues, including DNA methylation data on peripheral blood at multiple time points across lifecourse. Provides web interface to browse methylation variation between groups of individuals and across time.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Network to connect Canadian epigenetics researchers and expand their reach to broader health research community in Canada and beyond. Curated epigenomics sequence focused on common human diseases.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Central data access hub for large collections of epigenomic data. It organizes data from different sources using controlled vocabularies and ontologies. Data Server for storing, organizing, searching, and retrieving genomic and epigenomic data, handling associated metadata, and to perform different types of analysis.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Repository for chromatin interaction data. Records can be queried by genomic regions, gene names, organism, and detection technology. Database is continuously updated by curators. Contributions from scientific community.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Human disease methylation database. DiseaseMeth version 2.0 is focused on aberrant methylomes of human diseases. Used for understanding of DNA methylation driven human diseases.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger