Curator Dashboard

Pre-trained biomedical language representation model for biomedical text mining. This repository provides fine-tuning codes of BioBERT, language representation model for biomedical domain, especially designed for biomedical text mining tasks such as biomedical named entity recognition, relation extraction, question answering, etc.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Database for insights into single cell gene expression profiles during human developmental processes. Interactive database provides DE gene lists in each developmental pathway, t-SNE map, and GO and KEGG enrichment analysis based on these differential genes.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software tool as bioinformatics analysis pipeline used for RNA sequencing data. Workflow processes raw data from FastQ inputs, aligns reads, generates gene and transcript counts, and performs quality control on results.

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• SciCrunch
• 7 years ago - submitted by Fabiano Menegidio

Software tool as epigenomics analysis pipeline for analysis of ChIP-Seq and RNA-Seq data using Docker images containing Galaxy and Jupyter.

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• SciCrunch
• 7 years ago - submitted by Miriam Paya Milans

Cryostat for routine histology and cryosectioning including critical applications such as Mohs surgery. Brain sectioning. Actively cooled quick freezing shelf with defrost function and refrigeration system are provided.

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• RRID-Legacy
• 7 years ago - by Anonymous

Mouse monoclonal antibody to the C-terminal peptide of neurofilament NF-L, useful to reveal neurons and their processes in cell culture and sections and to follow neurofilament proteolysis

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• SciCrunch
• 7 years ago - submitted by Gerry Shaw

Software tool for neuron timelapse reconstruction, registration and analysis for Dynamic Morphometrics.

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• SciCrunch
• 7 years ago - submitted by Patrick Coleman

Annexin V is a 35-36 kDa Ca2+ dependent phospholipid-binding protein that has a high affinity for PS, and binds to cells with exposed PS. Annexin V may be conjugated to fluorochromes including phycoerythrin (PE). This format retains its high affinity for PS and thus serves as a sensitive probe for flow cytometric analysis of cells that are undergoing apoptosis.

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• RRID-Legacy
• 7 years ago - submitted by Rohit Singh

Recombinant Mouse Siglec-1 Fc Chimera Protein, CF Catalog# 5610-SL-050 Mouse myeloma cell line, NS0-derived mouse Siglec-1/CD169 protein Mouse Siglec-1 (Thr20 - Arg1639)-IEGRMDP-Mouse IgG2a (Glu98 - Lys330)

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• RRID-Legacy
• 7 years ago - submitted by Rohit Singh

EU data infrastructure with workflow connectivity layer. Common Workflow Language. Project pioneers methodologies and integrated set of supporting technologies that will transform European RIs productivity and rate of innovation when three challenges – extreme data, extreme computation and extreme complexity – are faced simultaneously.

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• SciCrunch
• 7 years ago - submitted by Anita Bandrowski

Platform for reproducible research. Code base for publishing data. For merging science and cyberinfrastructure pathways. Data Infrastructure Building Block (DIBBS) initiative to build scalable, open source, web-based, multi-user platform for reproducible research enabling creation, publication, and execution of tales – executable research objects that capture data, code, and complete software environment used to produce research findings. To enable researchers to define and create computational environment to manage complete conduct of computational experiments and expose them for analysis and reproducibility.

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• SciCrunch
• 7 years ago - submitted by Anita Bandrowski

To identify role of pharmacokinetic and pharmacodynamic gene variation in nicotine dependence phenotypes, with focus on prospective smoking cessation and medication response.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Project to facilitate primate research by enabling neuroscience researchers to access collections either on-site or via the web for use in their own research programs. Collections of macaque brain tissue available to investigators worldwide to provide cost effective means for researchers to conduct de novo studies on non-human primate brain.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Nonhuman Primate reference transcriptome resource consisting of deep sequencing complete transcriptomes (RNA-seq) from multiple NHP species.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Atlases enable alignment of individual scans to improve localization and statistical power of results, and allow comparison of results between studies and institutions. Set of multi subject atlas templates is constructed specifically for functional and structural imaging studies of rhesus macaque.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Software Python package to automate building of ML pipelines by combining flexible expression tree representation of pipelines with stochastic search algorithms such as genetic programming.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Software Python package to automate building of ML pipelines by combining flexible expression tree representation of pipelines with stochastic search algorithms such as genetic programming.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Portal provides access to data and web based applications created for benefit of global research community by Allen Institute for Brain Science. Projects to ombine genomics with neuroanatomy by creating gene expression maps for mouse and human brain. Mouse Brain Atlas, Human Brain Atlas, Developing Mouse Brain Atlas, Developing Human Brain Atlas, Mouse Connectivity Atlas, Non-Human Primate Atlas, and Mouse Spinal Cord Atlas and three related projects Glioblastoma, Mouse Diversity, and Sleep data banks, are used to advance various fields of science especially in neurobiological diseases.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Collection of gene expression information during mouse development in MGI. GXD has developed RNA-Seq and Microarray Experiment Search to find specific mouse expression studies in ArrayExpress and GEO. Based on standardized metadata annotations, users can specify age, anatomical structure, mutant alleles, strain and sex of samples of interest as well as experiment study type and key parameters.

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Knockout Mouse Phenotyping Project, JAX information about their contributions to KOMP2 project. Project to generate and phenotype single gene KO mouse strains from KOMP ES cell lines. Strains are phenotyped using protocols in pipeline designed by International Mouse Phenotyping Consortium. There are three NIH-funded phenotyping centers in United States: JAX, BaSH Consortium (Baylor College of Medicine, the Wellcome Trust Sanger Institute and MRC Harwell), and the DTCC Consortium (University of California at Davis, the Toronto Center for Phenogenomics, Children’s Hospital Oakland Research Institute (CHORI) and Charles River ).

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• RRID-Legacy
• 7 years ago - submitted by Ethan Badger