Curator Dashboard

Software package for processing of high-resolution neuroimaging data. Nighres is a community-developed project that aims to make neuroscience data tools easier to install, use and extend.

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• SciCrunch
• 9 years ago - submitted by Julia Huntenburg

Software that analyzes count data from RNA-capture-seq and ATAC-capture-seq experiments. Using BioConductor RangedSummarizedExperiment objects, atacr implements a set of helper functions and quality control plots specific to the analysis of counts of reads in windows across genomes.

• RRID-Legacy
• 9 years ago - submitted by Dan MacLean

Software for rapidly curating structural variant (SVs) predictions. SV-plaudit provides a pipeline for creating image views of genomic intervals, automatically storing them in the cloud, deploying a website to view/score them, and retrieving scores for analysis.

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• SciCrunch
• 9 years ago - submitted by Jon Belyeu

Software to extract and trace neuronal structure from confocal laser scanning microscope images. It performs the automatic reconstruction of neurons for image stacks and can generate compartmental models of neurons as swc file format data.

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• RRID-Legacy
• 9 years ago - submitted by Hidetoshi Ikeno

Software that provides all the necessary functionality for full-model build up, from CAD data to ready-to-run solver input file. Its integrated Batch Meshing tool leads to results for both shell and volume meshing.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software based on robust registration and simultaneous hippocampal segmentation and longitudinal marker classification of brain MRI of an arbitrary number of time points. The framework comprises two parts: a longitudinal segmentation and a longitudinal classification step.

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• NIF
• 9 years ago - submitted by Matt Travers

Database of events about articles that is run by CrossRef. It allows users to view social media mentions, news publication references, annotations, and more.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Software for profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data Used for millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members.

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• SciCrunch
• 9 years ago - by Anonymous

Database of naturally processed MHC-restricted peptide ligands and epitopes for customized computational vaccinology.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Database for MHC antigenic peptide of Mycobacterium tuberculosis. It aims to make a comprehensive repository of synthetic antigenic peptides predicted from several MHC predication servers.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Database of HLA supertype-specific epitopes. It describes major histocompatibility complex (MHC) molecules that bind short peptides derived from endogenous or exogenous antigens and present them onto the surface of antigen-presenting cells (APCs) for T-cell receptor (TCR) recognition.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Software for error correction of optical mapping data.

• RRID-Legacy
• 9 years ago - submitted by Kingshuk Mukherjee

Software for dynamic clamping. It uses National Instruments Boards.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software for determination of cryo-EM structures. It employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy.

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• RRID-Legacy
• 9 years ago - by Anonymous

Database that consolidates information on genes and phenotypes across multiple resources and allows tracking and exploring of the associations. Part of Gemma, a web site, database and a set of tools for the meta-analysis, re-use and sharing of genomics data.

• RRID-Legacy
• 9 years ago - submitted by Devon Gilpatrick

Web based software for analyzing genomic variants CNVs, SNVs, and Indels and phenotypes. It aims to represent the relationships between discovered variants and phenotypes.

• RRID-Legacy
• 9 years ago - submitted by Devon Gilpatrick

Web application for creating, collecting, testing, and sharing metadata. It provides templates for metadata models or structures, and is capable of testing those models quickly using real data.

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• SciCrunch
• 9 years ago - submitted by Jeffrey Grethe

Develops information technologies that make authoring complete metadata more manageable. Its products aim to facilitate using the metadata in further research.Center to improve metadata and its use throughout biomedical sciences. Develops information technologies that make authoring complete metadata more manageable through better interfaces, terminology, metadata practices, and analytics. Optimizes metadata pathway from provider to end user. Provides way for funders to specify what metadata they want to collect as part of research life cycle.

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• SciCrunch
• 9 years ago - submitted by Jeffrey Grethe

Software toolkit which automates the loading, storage, linkage and provision of data sets. It also cleans, transforms and documents provenance meta-data and domain knowledge to make data sets “research ready”.

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• SciCrunch
• 9 years ago - submitted by Emily Jefferson

Web page for cyclic immunofluorescence. It lists several downloadable data and software pertaining to cyclic immunofluorescence.

• RRID-Legacy
• 9 years ago - submitted by Jia-Ren Lin