Curator Dashboard

Software tool as plugin to enable viewing of results produced from workflows integrating genomic sequencing data and mass spectrometry proteomics data. Plugin to Galaxy bioinformatics workbench which enables visualization of mass spectrometry-based proteomics data integrated with genomic and/or transcriptomic sequencing data. Useful for verifying quality of results and characterizing novel peptide sequences identified using multi-omic proteogenomic approach.

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• SciCrunch
• 7 years ago - submitted by Tim Griffin

Integrated software platform for ion channel biophysics and neurophysiology.Used to explore dynamics of hidden states in memoryless system. Open source software suite for solving kinetic models, for report generation with publishable graphics, function fitting and scripting for new and repeated processing and AD/DA I/O. Can be applied to any data modeled with Markov kinetics., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 7 years ago - by Anonymous

Collection of published Amyotrophic lateral sclerosis associated genes and variants. Database can be searched to look for specific type of mutation like compound, insertion, deletion, substitution or non-pathological variant in ALS gene of interest including SOD1, ALS2, VAPB or NEFH. For each mutation DNA position mutated, original DNA sequence, mutated DNA sequence, original amino acid, mutated amino acid, intron/exon location, zygosity, and link to hypothetical mutant structure, can be identified.

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• SciCrunch
• 7 years ago - by Anonymous

Web based serverless viewer of QIIME 2 artifacts and visualizations. Client side interface for viewing QIIME 2 artifacts and visualizations. Not needed working QIIME 2 installation to inspect QIIME 2 results. Supports viewing externally hosted files by automatically downloading and displaying them when links to files are provided.

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• RRID-Legacy
• 7 years ago - by Anonymous

OmniGrid 100 microarrayer is high capacity multi axis microarrayer that prints biological samples onto solid substrates with speeds that give high throughput array production. Can be integrated with optional Server Arm 3 for fully automated handling of up to 72 input plates.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Software package as comprehensive qualitative and quantitative suite for proteomics. Used to validate and quantify proteins by combining results from popular mass spectrometry platforms and database search engines. Provides customizable interface to support any form of biological annotation. Used to compare protein quantitative results in relation to biological pathways, protein localization, protein function, or to transcript abundance. Every protein identification can be linked to any external or internal knowledge database. Custom links are provided to GenBank, UniProt, IPI, and SwissProt databases or in-house LIMS.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Software tool that automates all preprocessing steps of cryo-EM data acquisition and enables real-time evaluation. Corrects micrographs for global and local motion, estimates local defocus and monitors key parameters for each recorded micrograph or tomographic tilt series in real time. Software includes deep-learning-based models for accurate particle picking and image denoising.

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• RRID-Legacy
• 7 years ago - by Anonymous

Suite of open software command line tools to develop high-quality pictures from high-throughput sequencing samples. Source code is designed to be integrated into existing bioinformatics pipelines. SeqCode web is web interface implemented to show only selection of features of standalone distribution. Suite of command-line software for high-performance comprehensive analysis of ChIPseq data. Designed to develop high-quality images and perform genome-wide calculations from high-throughput sequencing experiments. Presented into two distinct modes: web tools and command line.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to leverage power of Docker and Spark to run and scale your serial tools in MapReduce fashion.

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• SciCrunch
• 7 years ago - submitted by Marco Capuccini

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 22, 2023. Data repository for scientific data. Open data library to explore neuroscience data for neurodegenerative diseases for which there are no disease modifying treatments.

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• dkNET
• 7 years ago - submitted by Maryann Martone

Analyzer that uses spectral technology to collect photons from 420nm to 800nm. Global standardization mode automatically sets system to master specification with single click. Sony patented Flowpoint core stability and tracking system and automated QC ensure highest resolution possible of target populations.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Benchtop cell sorter that sorts wide range of cell sizes for many applications using microfluidic sorting chips. Integrated with comprehensive fluidics controls and advanced automation for set-up, acquisition, sort and analysis. System software supports sorting into tubes and 96- and 384-well plates. Software generates FCS 3.0 and FCS 3.1 files that can be exported to third party analysis tools. For non-clinical research use only. For applications in which cross-contamination is concern, optional e-beam sterilized consumables can be used to replace sample line and sorting chip. Optional class A2 Level II biosafety cabinet provides protection for personnel and products. Biosafety cabinet meets international standards.Optical design offers up to four collinear excitation lasers (488 nm, 405nm, 561nm and 638nm) and six fluorescence detectors. The six free-form PMTs enable detection of fluorescence signals from any laser based on filter selection.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

PCR detection system that features broad spectrum light source. Filter based optical design allows selection of optimal wavelengths of light for excitation and emission. Pixel array on CCD detector allows for simultaneous imaging of all 96 wells every second. Simultaneous image collection insures that well-to-well data may reliably be compared. Reports data on PCR in progress in Real Time, allowing immediate feedback on reaction success.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Real Time PCR detection system that combines optical technology with temperature control. Six channel, five colors and one FRET channel, real-time PCR instrument for singlexplex or multiplex reactions. Quickly set up runs and monitor amplification traces in real time on integrated LCD touch screen, or use included CFX Maestro Software to design experiment and analyze results from connected computer.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Inverted microscope that enables confocal microscopy in cell and developmental biology.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Versatile laser scanning confocal microscope system that is available in both upright or inverted format. Equipped with ICS-Optics. Selection of dry, water immersion and oil immersion objectives are available. ICS-Optics are infinity color corrected.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Highly adaptable cryostat platform that can be tailor-made for each laboratory. Cryostat with encapsulated microtome and separate specimen cooling features UV disinfection system, optional integrated extraction system for section waste and optional motor for motorized sectioning. Designed to produce frozen sections for biological, medical and industrial applications.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Real Time quantitative PCR system that combines 96- and 384-well plate compatibility and the TaqMan Low Density Array with fully automated robotic loading and now also offers optional Fast real-time PCR capability. High-throughput Real-Time PCR system that detects and quantitates nucleic acid sequences. Uses fluorescent-based PCR chemistries to provide: Quantitative detection of nucleic acid sequences using real-time analysis and Qualitative detection of nucleic acid sequences using end-point and dissociation-curve analysis.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

96-capillary DNA analyzer that performs DNA fragment analysis applications such as microsatellites, AFLP, SNP analysis, mutation detection and traditional DNA sequencing. Has multiple automation features. Performs sequencing and fragment analysis applications including resequencing, microsatellite analysis, AFLP, LOH, SSCP, SNP screening and SNP validation.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Femto Pulse System separates large molecular weight DNA fragments and detects nucleic acids into femtogram range.Fragment analyzer that provides pulsed field power supply which allows large molecular weight DNA fragments to be separated and nucleic acids detected into femtogram range. Ability to separate high molecular weight DNA up to 165 kb and detect nucleic acids down to 50 fg per uL input concentration makes system ideal for long-read NGS QC, gDNA, small RNA, or cfDNA analysis from low concentration samples.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth