Curator Dashboard

CBCB Bioinformatics Core builds upon the infrastructure of the Delaware Biotechnology Institute (DBI) and the Protein Information Resource (PIR).planning your research or analyzing your current data.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Core supports DNA Sequencing of PCR, Plasmid, BAC�s and Fosmid templates, Fragment Analysis of Microsatellites, AFLP�s, t-RFLP�s, SHAPE Experiments and Human Cell Line Authentication.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Core offers researchers multi laser and multi color flow cytometry sorters and analyzers, including spectral and imaging flow cytometers.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

ABCF can provide MAbs from established hybridomas for RESEARCH PURPOSES ONLY, can assist in generating MAbs, offers a weekly mycoplasmal contamination screening service for tissue culture samples, distributes cell lines developed at Memorial Sloan Kettering Cancer Center and The Rockefeller University

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

MTGTF is to support the investigators in using genetically modified mouse models in Brown University, affiliated hospitals and academic institutions in Rhode Island and other states. The MTGTF provides services of molecular design and generation of transgenic and knock-out mouse models as well as general advice on the use and management of such models. The cutting-edge technologies of the CRISPR/Cas9 system are well established in the MTGTF to accomplish vast majority of the projects in a way of cost friendly, fast, and high quality. The conventional ES cell gene-targeting system is employed to serve as an alternative or to fill the limitations of the CRISPR/Cas9 system. Routine services include genotype analysis, sperm or embryo cryopreservation and storage, rederivation, in vitro fertilization (IVF). Other services, such as mouse vasectomy, embryo transfer, colony scale-up, intracytoplasmic sperm injection (ICSI) are also available. New services requiring MTGTF resources can be created through a request.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Core provides services to its users with expertise in biostatistics, microarray data analysis, proteome informatics, next generation sequencing data analysis, functional analysis, database development and information technology, including data storage infrastructure and high performance computing. Working closely with VGN Proteomics Facility, offers investigators experimental design consultations, comprehensive data analysis, data management and publishing, and manuscript and grant support. Core personnel also engage in teaching and training activities for data analysis and compute resources necessary for VGN network investigators. Our goal is to provide network researchers with bioinformatics expertise.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Advanced Genomic Technologies Cluster provides next-generation sequencing and Sanger sequencing. Next-generation sequencing services are provided using Illumina MiSeq and NextSeq sequencers. Services are available for amplicon re-sequencing, viral or microbial whole genome sequencing and 16S microbiome sequencing. Sanger DNA Sequencing can be performed on DNA templates such as PCR products and plasmids using ABI 3730xl and ABI3130xl instruments.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Analytical Imaging Facility (AIF) provides state of the art methods in modern light and electron microscopy imaging to biomedical scientists with all levels of expertise.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Core for high resolution structural biology at the University of Vermont. X-ray crystallography allows biological and biomedical researchers to visualize proteins, RNA, DNA and their complexes at atomic resolution. The molecular details of specimens as small as DNA binding domains and as large as the ribosome have been elucidated via this powerful method. The CXX provides resources for all stages of macromolecular structure determination.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Open source software package for circuit level interpretation of human EEG/MEG data. Software tool for interpreting cellular and network origin of human MEG/EEG data. Simulates electrical activity of neocortical cells and circuits that generate primary electrical currents underlying EEG/MEG recordings. Designed for researchers and clinicians, without computational neural modeling experience, to develop and test hypothesis on circuit origin of their data.

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• RRID-Legacy
• 7 years ago - submitted by Samuel Neymotin

Software toolbox for connectivity based parcellation of monkey brain. Integrated pipeline realizing tractography based brain parcellation with automatic processing and massive parallel computing. Highly automated process and high throughput performance supported by GPU option makes toolbox ready to be used by research community.

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• NIF
• 7 years ago - by Anonymous

Functional genomic database for malaria parasites. Database for Plasmodium spp. Provides resource for data analysis and visualization in gene-by-gene or genome-wide scale. PlasmoDB 5.5 contains annotated genomes, evidence of transcription, proteomics evidence, protein function evidence, population biology and evolution data. Data can be queried by selecting from query grid or drop down menus. Results can be combined with each other on query history page. Search results can be downloaded with associated functional data and registered users can store their query history for future retrieval or analysis.Key community database for malaria researchers, intersecting many types of laboratory and computational data, aggregated by gene.

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• RRID-Legacy
• 7 years ago - submitted by Jenna Oberstaller

Galaxy-based web service for analysis of Chromatin Immuno Precipitation (ChIP) data. Integrative platform for transcriptional regulation studies. Data analysis platform based on Galaxy open source framework. Besides standard Galaxy functions, Cistrome has ChIP-chip- and ChIP-seq-specific tools in three major categories, from preliminary peak calling and correlation analyses to downstream genome feature association, gene expression analyses, and motif discovery. Used to conduct data integration to mine hidden biological insights from publicly available high throughput data.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

sc-398423

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• SciCrunch
• 7 years ago - submitted by Yasaman Aghazadeh

14-3-3gamma antibody 14-3-3 γ Antibody (D-6) is a mouse monoclonal IgG1 (kappa light chain) provided at 200 µg/ml specific for an epitope mapping between amino acids 128-149 within an internal region of 14-3-3 γ of human origin 14-3-3 gamma Antibody (D-6) is recommended for detection of 14-3-3 γ of mouse, rat, human and avian origin by WB, IP, IF and ELISA; also reactive with additional species, including and equine, canine, bovine, porcine and avian 14-3-3 gamma Antibody (D-6) is available conjugated to agarose for IP; HRP for WB, IHC(P) and ELISA; and to either phycoerythrin or FITC for IF, IHC(P) and FCM also available conjugated to Alexa Fluor® 488, Alexa Fluor® 546, Alexa Fluor® 594 or Alexa Fluor® 647 for WB (RGB), IF, IHC(P) and FCM, and for use with RGB fluorescent imaging systems, such as iBright™ FL1000, FluorChem™, Typhoon, Azure and other comparable systems also available conjugated to Alexa Fluor® 680 or Alexa Fluor® 790 for WB (NIR), IF and FCM; for use with Near-Infrared (NIR) detection systems, such as LI-COR®Odyssey®, iBright™ FL1000, FluorChem™, Typhoon, Azure and other comparable systems blocking peptide, sc-398423 P See m-IgGκ BP-HRP (mouse IgGκ binding protein-HRP), our highly recommended recombinant alternative to conventional secondary anti-mouse IgG reagents. Contact our Technical Service Department (or your local Distributor) for more information on how to receive a FREE 10 µg sample of 14-3-3 γ (D-6): sc-398423.

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• SciCrunch
• 7 years ago - submitted by Yasaman Aghazadeh

Software tool for automated eukaryotic gene structure annotation that reports eukaryotic gene structures as weighted consensus of all available evidence. Used to combine ab intio gene predictions and protein and transcript alignments into weighted consensus gene structures. Inputs include genome sequence, gene predictions, and alignment data (in GFF3 format).

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• SciCrunch
• 7 years ago - submitted by Shuang Jiang

Rabbit polyclonal antibody against GAPDH. Provider: Yeason, Cat#30202ES40

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• SciCrunch
• 7 years ago - submitted by Xiaoling Jiang

Strategy guide for HED Annotation. Framework for systematically describing laboratory and real world events.HED tags are comma separated path strings. Organized in forest of groups with roots Event, Item, Sensory presentation, Attribute, Action, Participant, Experiment context, and Paradigm. Used for preparing brain imaging data for automated analysis and meta analysis. Applied to brain imaging EEG, MEG, fNIRS, multimodal mobile brain or body imaging, ECG, EMG, GSR, or behavioral data. Part of Brain Imaging Data Structure standard for brain imaging.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Public research university in Los Angeles. It became Southern Branch of University of California in 1919, making it fourth-oldest of 10-campus University of California system and oldest of campuses in Southern California.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

FAIRsharing is a web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards, databases and data policies, combined with an integrated view across all three types of resource. By registering your resource on FAIRsharing, you not only gain credit for your work, but you increase its visibility outside of your direct domain, so reducing the potential for unnecessary reinvention and proliferation of standards and databases.FAIRsharing Portal: search and navigate through our interlinked content; help your decision-making process through our life cycle and adoption indicators; recommend resources, grouped by domain, species or organization; add/edit a resource's record.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth