Curator Dashboard

The oldest technical university in Poland, located in Warsaw, with faculties including architecture, machine design, electrical engineering, automotive and construction machinery engineering, electronics , information technology, mechatronics , geoinformatics, automatic control and robots, and biomedical engineering.

• Organization
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software environment for the quantification of biomedical images. Biomedical image processing, analysis, and modeling software. Consists of set of tools for kinetic modeling, parametric mapping, image registration, 3D rendering and pattern analysis. Used for quantification of PET data. Many quantification methods are generic and can be applied to other modalities such as SPECT, MR and CT.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software as a cross platform application for automating the processing of μCT and OPT image data. Used for standarization of embryo images prior to export to the PhenoDCC. Capable of processing other image modalities and specimens. Can be download as a stand alone release.

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• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool as a desktop 3D volume viewer. Used for analysing results of automatic phenotype detection from the LAMA pipeline. Developed in Python using QT, and the PyQtGraph.

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• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool as an annotation structure and user-hosted platform for sequencing experiment data, suitable for lab-internal documentation, collaborations and large-scale annotation efforts.

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• SciCrunch
• 8 years ago - by Anonymous

Library of a test driven framework for formally validating scientific models against experimental data used for validation testing of spiking neuron network simulations on the network activity level.

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• SciCrunch
• 8 years ago - submitted by Michael Denker

Facility for biomedical research and a teaching hospital of Harvard Medical School located in the West End neighborhood of Boston, Massachusetts. The third oldest general hospital in the United States and conducts the largest hospital-based research program in the world.

• Organization
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package for simulation framework and codes for estimating nonparametric Granger causality. Used to study brain functions.

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• RRID-Legacy
• 8 years ago - by Anonymous

Dataset. We have a DataNote paper in Gigascience, in press which introduces a large videography dataset that is freely available for anyone to study the principles of tactile navigation.

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• RRID-Legacy
• 8 years ago - by Anonymous

Platform for analysis of the genetics of cardiovascular disease.Used for searching and analysis of human genetic information linked to myocardial infarction, atrial fibrillation and related traits while protecting the integrity and confidentiality of the data.

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• SciCrunch
• 8 years ago - submitted by Ko-Wei Lin

Software tool written in Java that reads DICOM-files from Dynamic Susceptibility Contrast (DSC) Magnetic Resonance Imaging (MRI) and calculates standardized Time-to-Peak (stdTTP) parameter. Maps from this calculation are provided as RGB- and Monochrom2-Dicom files and may be sent to a PACS automatically. Works on windows® platforms on PC’s (Intel® CPUs from Pentium I up to the I7-octo cores) together with the Philips 1.5T ACS-NT up to the Ingenia Systems (n> 20.000), with the Philips 3.0T Systems (n ~ 1.000), the Siemens 1.5T Avanto (SQ-machine) (n> 10.000) and the Siemens 3.0T TimTrio (n ~ 200) so far. Works with uncompressed DICOM-standard files.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software package as a DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool as a program for building skeletonized models of 3D structures with a graphical user interface. GUI based neuronal network model building.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool as a program for tomographic reconstruction and image processing of micro/nano-CT data taken at SPring8 and APS Argonne.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool as a catalog of comprehensive reference of human cells based on their stable properties, transient features, locations and abundances. Map to show the relationships among its elements. Open data international collaborative project involving diverse scientific communities to provide a framework for understanding cellular dysregulation in human disease.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Departamental portal of Applied Biochemistry, School of Engineering, Tokai University, Japan. Used for computed tomography (CT) and visualizing 3D structures of biological soft tissues represented with Cartesian coordinates.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Positioner for automated rotation of a head-fixed rodent specimen about the anterior-posterior and medio-lateral axes for imaging or other purposes. Provides automated Z translation and can be customized to accommodate various head bar designs.

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• SciCrunch
• 8 years ago - submitted by Boaz Mohar

Software tool for analysis of large 16S rRNA pyrosequences by using a consensus alignment algorithm, utilizing the sequence redundancy of abundant species in the pyrosequence dataset.

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• RRID-Legacy
• 8 years ago - submitted by Kate Kennedy

Scanner for microarray analysis to scan next-generation higher-density arrays, including SNP arrays, tiling arrays for transcription and all-exon arrays for whole-genome analysis.

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• RRID-Legacy
• 8 years ago - submitted by Thai Tran

Software tool for microarray analysis designed for biologists . Used for identification of differential expression by providing interactive visualizations.

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• RRID-Legacy
• 8 years ago - submitted by Thai Tran