Curator Dashboard

Web and offline tool for holistic sustainability assessment of farms. Tool operationalizes Sustainability Assessment of Food and Agriculture Systems Guidelines of Food and Agriculture Organisation of United Nations. Tool consists of questionnaire software, centralized database, pool of indicators and scientifically based assessment methodology. Different stakeholders can use results of this assessment e.g. for comparing different farms, production systems or for strategic development, improvement, monitoring and communication to business partners.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Next generation B and T cell sequence alignment and characterization online surface by IMGT. Web portal for immunoglobulin (IG) or antibody and T cell receptor (TR) analysis from NGS high throughput and deep sequencing.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software Python tool for flow cytometry data. Data generated by flow cytometer can be read by FlowPy. Used for data extraction, data visualization, data clustering, histogram subtraction.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Web tool as basic math calculator to do simple calculation. Can generate any one of values from other three in half life formula for substance undergoing decay to decrease by half.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as code to extract electrophysiological parameters of neurons. Code is continuously being updated to handle more kinds of voltage traces and extract different kinds of features.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software tool as code for processing and analyzing data in Allen Brain Atlas. Source code for reading and processing Allen Brain Atlas data. Allen SDK focuses on Allen Brain Observatory, Cell Types Database, and Mouse Brain Connectivity Atlas.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Web server to predict ΔGapp for membrane insertion of potential TM helix. Given amino acid sequence of putative transmembrane helix, server gives prediction of corresponding apparent free energy difference for insertion of this sequence into Endoplasmic Reticulum membrane by means of Sec61 translocon.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software R interface to g:Profiler. Uses publicly available APIs of g:Profiler web tool which ensures that results from all of interfaces are consistent. Used for gene list functional enrichment analysis and namespace conversion. gprofiler2 package supports all the same organisms, namespaces and data sources as the web tool.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Culture chamber for cell culture by BioSpherix. Functionalized by gas controllers for all bioactive gases, e.g. O2, CO2, CO, NO, etc. Made of clear polycarbonate. Magnetic seal door. Temperature is controlled. Combines with ProOx 110, ProCO2, ProOx C21, OxyCycler Series.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Software package for motion capture analysis by Innovision Systems Inc.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

List of proteins commonly found in proteomics experiments that are present either by accident or through unavoidable contamination of protein samples. List is based on analysis of current version of GPMDB, as well as suggestions by users. Current version of cRAP in FASTA format can be obtained from the GPM FTP site.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software for designing CRISPR/Cas guide RNA with reduced off target sites. Used for rational design of CRISPR/Cas target. Web server for selecting rational CRISPR/Cas targets from input sequence. Server currently incorporates genomic sequences of human, mouse, rat, marmoset, pig, chicken, frog, zebrafish, Ciona, fruit fly, silkworm, Caenorhabditis elegans, Arabidopsis, rice, Sorghum and budding yeast.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Web tool as probabilistic approach to visualizing protein or nucleic acid sequence motifs. Used for motif visualization in which residue heights are scaled relative to their statistical significance. Supports real time conditional probability calculations and visualizations.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Web tool for calculating number of cells that must be sampled in order to see at least n cells of each type for single cell genomics experiments.

• Resource
• dkNET
• 7 years ago - submitted by Maryann Martone

Software tool as code for processing and analyzing data in Allen Brain Atlas. Source code for reading and processing Allen Brain Atlas data. Allen SDK focuses on Allen Brain Observatory, Cell Types Database, and Mouse Brain Connectivity Atlas.

• Resource
• NIF
• 7 years ago - submitted by Maryann Martone

Web server for quantitative prediction of peptide binding to any MHC molecule of known sequence using artificial neural networks. Characterizes binding specificity of given major histocompatibility complex molecule and predicts peptide length profile and peptide binding affinity. NetMHCpan 3.0 is improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length data sets. NetMHCpan 4.0 is trained on naturally eluted ligands and on peptide binding affinity data. NetMHCpan-4.1 server predicts binding of peptides to any MHC molecule of known sequence using artificial neural networks (ANNs).

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software R package for mapping quantitative trait loci with high dimensional data and multiparent populations. Used for analysis of high dimensional data and complex crosses. Interactive software environment for mapping quantitative trait loci in experimental populations.R/qtl2 software expands scope of R/qtl software package to include multiparent populations derived from more than two founder strains, such as Collaborative Cross and Diversity Outbred mice, heterogeneous stocks, and MAGIC plant populations.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Jason Bubier

Database provides access to genotype and phenotype data from experiments with Diversity Outbred mice. Data can be searched by publication, investigator, and data type and can be downloaded in zipped CSV or R/QTL2 formats. Users can download full studies or subset of samples, genotypes, clinical phenotypes and molecular phenotypes including transcript, proteomic, and metabolomic profiling data.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Jason Bubier

Software tool as algorithm that represents nodes as vectors by integrating bioentity attribute such as RNA sequence and bioentity behavior that is relationship between bioentities.

• Resource
• SciCrunch
• 7 years ago - submitted by Zhen-Hao Guo

Pipeline for analyzing and identificantion of chromatin loops in CHi-C promoters data. Used to capture Hi-C visualization and interaction calling.

• Resource
• SciCrunch
• 7 years ago - submitted by Thomas Sexton