Curator Dashboard

Software tool as a program within the standalone BLAST package used to cluster either protein or nucleotide sequences. Used to make non redundant sequence sets.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Web portal for global query cross database search and retrieval system that provides access to all databases simultaneously with a single query string and user interface. Retrieves nucleotide and protein sequence data, gene centered and genomic mapping information, 3D structures, and references. Covers databases including protein sequence data from PIR-International, PRF, Swiss-Prot, and PDB and nucleotide sequence data from GenBank that includes information from EMBL and DDBJ.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Interactive database of gene expression and diabetes related clinical phenotypes. Allows to search gene expression in tissues as a function of obesity, strain, and age, in a mouse.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software tool for comparing EST profiles in order to identify genes with significantly different expression levels.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Project for assemblies of incomplete genomes or incomplete chromosomes of prokaryotes or eukaryotes that are being sequenced by a whole genome shotgun strategy. WGS projects may be annotated, but annotation is not required. The nucleotide and protein data from all WGS projects go into the BLAST database.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool as a command-line program that automates the creation of sequence records for submission to GenBank. Records need no additional manual editing before submission.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for a flow cytometry data analysis for Microsoft Windows enviroment developed by CyFlo Ltd. Has analysis capabilities, such as dot plot, histogram and statistics.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software program for loading numbers of genome records. Allows the retrieval of a large number of nucleotide sequences or protein sequences, in a batch mode, by importing a file containing a list of the desired GI or accession numbers.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Parser for Schrodinger Maestro files. This format is used for computational modeling, and stores molecules with 2D or 3D coordinates and detailed atom and bond information.

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• SciCrunch
• 8 years ago - by Anonymous

Web server as semi automated tool that identifies nucleotide sequences in scientific publications, determines whether they are correctly identified. Seeks for nucleotide sequences in pdf files and then call local version of blastn. Text mining and text analysis tool to allow peers to identify errors in published or forthcoming scientific literature. Used to search and extract gene identifiers and nucleotide sequences against human genomic and transcript database.

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• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Collection of reference datasets for human immunology, derived from control subjects in the NIAID ImmPort database . Available data include flow cytometry, CyTOF, multiplex ELISA, gene expression, HAI titers, clinical lab tests, HLA type, and others.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Open framework for evaluating correspondence between brain images and teaching neuroanatomy.

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• RRID-Legacy
• 8 years ago - by Anonymous

Web service to analyze gene or protein lists. Provides automated meta analysis tools to understand pathways within a group of orthogonal target-discovery studies.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software tool to analyze human immunoglobulin V(D)J recombination and performing Ig nucleotide and amino acid alignment, as well as extensive mutation and Complementarity Determining Region 3 (CDR3H) analysis.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software package to define the interactions between individual molecules in a large network or the behaviors of cells in response to external signals. It consists of three components: Modeler, Cell Designer and Simulator.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Collection of classified bacterial ATP-binding cassette (ABC) transporter systems. The transporter systems identified fulfill the three roles characterized by the nucleotide-binding domain (NBD) , transmembrane domain (TMD), and solute-binding protein (SBP) domains.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software interactive tool for visualizing and analyzing network data in the spatial context of the chromosome. Used to discover the role of gene organization in functional regulatory networks. Plugin enables users of Cytoscape to overlay networks onto a circular chromosomal map.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Web server to visualize phylogenetic, biochemical, and immunological hemagglutinin data in the three-dimensional context of homology models. Database and structural visualization platform for comparative models of influenza A hemagglutinin proteins.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Collection of open chromatin regions from sequencing data. Metadata as entire curated DNase-I hypersensitive sites (DHS) on the whole genome datasets and data specific to each chromosome.

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• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Suite of software applications for capturing, enhancing and analyzing microscope images for SPOT camera by SPOT Imaging, a division of Diagnostic Instruments, Inc.

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• RRID-Legacy
• 8 years ago - by Anonymous