Curator Dashboard

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 18th,2023. Software package for genome analysis. Used for analysis of next generation genomic data in cancer.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package for copy number estimation from tumor genome sequencing data.Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for identifying, understanding, and correcting technical biases on the sex chromosomes in next generation sequencing data.

• Resource
• SciCrunch
• 8 years ago - submitted by Timothy Webster

Platform as a web-based interactive environment to automatically identify, explore and visualize homology and functional annotations for assembled transcripts.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Nicolas Tchitchek

Software as an R-based visual framework for analysis of sequencing datasets. Provides a framework for integrative and interactive analyses.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tools for compound-centric data mining and navigation. Used to identify compounds in overlapping and co-eluting peaks with feature extraction and correlation algorithms for chromatographic separation. Used for separating true signals from noise.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool developed for Statistical Parametric Mapping (SPM) that computes slicewise scan by scan difference and standard deviations. Used to examine quality of image timeseries.

• Data Set
• dkNET
• 8 years ago - submitted by Maryann Martone

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 18,2023. Software tool for general particle picking in the single-particle processing of unknown macromolecules. Reference free particle picker with ability to sort particles based on size or it can be used to bootstrap the creation of templates or training datasets for other particle pickers. Used to facilitate particle selection in single particle electron microscopy., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for multi level analysis of applications optimized for ImageXpress instruments. High-content image analysis software featuring time lapse analysis. Used for 2D and 3D imaging.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool to identify pockets on protein surface to predict ligand-binding sites.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software assembler and analysis tool for whole-genome short-gun sequencing for Illumina reads. Provides tools for error correction, sequence-to-read alignment and comparison between read sets. Used for large genomes.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software toolbox for MATLAB for the descriptive and inferential statistical analysis of directional data.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Diego Lozano

Core provides technology for functional proteomics studies and centralized, standardized and quality controlled services locally and globally.

• Resource
• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Software package for eye tracking studies by New Bio Technology Ltd. Used for designing eye movement studies and recording, analyzing, visualizing data of eye tracking results.

• Data Set
• dkNET
• 8 years ago - submitted by Maryann Martone

Instrument for nanoparticle tracking analysis. A semi-automated method for the characterization of extracellular vesicles with associated analysis software by ParticleMetrix GmbH.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tool to assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes by using a broader set of marker genes specific to the position of a genome within a reference genome tree and information about the collocation of these genes.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Web tool to identify the genotype of a viral sequence. A window is slid along the query sequence and each window is compared by BLAST to each of the reference sequences for a particular virus.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool that helps taxonomists find closest database neighbors of submitted query sequences by generating a phylogenetic tree from BLAST results.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool to search for open reading frames (ORFs) in the DNA sequence. The program returns the range of each ORF, along with its protein translation. Used to search newly sequenced DNA for potential protein encoding segments, verify predicted protein. Limited to the subrange of the query sequence up to 50 kb long.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Web tool for analysis of pairwise identity distribution within viral families. Used for virus sequence-based classification. Data in the system are updated every day to reflect changes in virus taxonomy and additions of new virus sequences to the public database.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth