Curator Dashboard

Software tool as cross platform, language agnostic binary package manager. Open source package management system and environment management system that runs on Windows, macOS and Linux. Can quickly install, run, and update packages and their dependencies. Package, dependency and environment management for any language—Python, R, Ruby, Lua, Scala, Java, JavaScript, C/ C++, FORTRAN, and more. Created for Python programs, but it can package and distribute software for any language. Conda can be combined with continuous integration systems such as Travis CI and AppVeyor to provide frequent, automated testing of your code. Conda package and environment manager is included in all versions of Anaconda and Miniconda.

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• SciCrunch
• 7 years ago - by Anonymous

Software distribution management for life sciences. Channel for Conda package manager specializing in bioinformatics software. Consists of repository of recipes hosted on GitHub, build system turning these recipes into conda packages, repository of packages containing bioinformatics packages ready to use with conda install.

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• SciCrunch
• 7 years ago - by Anonymous

Open source web application to create and share documents that contain live code, equations, visualizations and narrative text. Used for data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning.

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• SciCrunch
• 7 years ago - by Anonymous

Interactive web based tool for analyzing biomacromolecular channels, tunnels and pores. Enables two modes of calculation with one dedicated to analysis of channels and another for transmembrane pores. Can use PDB and mmCIF formats. Can analyze biomacromolecular structures stemming from NMR, X-ray and cryo-EM techniques. Interconnected with PDBe, CSA, ChannelsDB, OPM, UniProt to help setup and analysis of acquired results. Provides analytics for detection and structural characterization of channels and information about their physicochemical features.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to accompany existing resources such as Python programming language resource and comprehensive Perl archive network (CPAN) resource. Perl is family of two high level, general purpose, interpreted, dynamic programming languages. Perl refers to Perl 5, but from 2000 to 2019 it also referred to its redesigned sister language, Perl 6, before name was officially changed to Raku in October 2019.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as modeling system for mathematical optimization by GAMS Development Corporation. GAMS is designed for modeling and solving linear, nonlinear, and mixed-integer optimization problems. Used in genome scale modeling.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to perform basic and specific analysis procedures on fluorescent microscopy and fluorescent lifetime imaging microscopy data. Requires MATLAB with image processing and statistical toolboxes. Can import fluorescent data from Olympus, Biorad, Femtonics, TIFF, Excel, ASCII files.

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• dkNET
• 7 years ago - by Anonymous

Software tool as instrument software for SPC- and DPC Modules by Becker and Hickl GmbH.

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• dkNET
• 7 years ago - by Anonymous

Software package for measurement control and analysis by Femtonics Ltd. Designed in MATLAB and used in field of cellular and network imaging. New version offers new scanning features and improved overall usability.

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• dkNET
• 7 years ago - by Anonymous

Software tool as cross platform automatic AC-PC realignment,reorientation and coregistration robust to brain damage, using template matching in SPM12. Provides two new tools auto_acpc_reorient and auto_acpc_coreg using toolbox Statistical Parametric Mapping 12 to reorient and coregister structural, functional and other modalities of MRI volumetric brain images.

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• SciCrunch
• 7 years ago - submitted by Stephen Karl Larroque

Software tool to find and visualize rearrangements in DNA sequences.

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• SciCrunch
• 7 years ago - submitted by Morteza Hosseini

Software tool to transfer learning based deep neural network to impute missing gene expression data from DNA methylation data.

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• SciCrunch
• 7 years ago - submitted by Xiang Zhou

Web tool to explore and visualize Antibiotic Resistance Genes found on Tara Oceans samples. Can be explored by individual ARG or grouped by antibiotic class.

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• SciCrunch
• 7 years ago - submitted by Rafael Cuadrat

Assists researchers and clinicians with molecular and morphologic characterization of normal and disease tissues of interest in support of biomarker discovery and translational research. Offers both routine and advanced histology immunohistochemistry, in situ and whole slide scanning services.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Produces high titer lentiviral and AAV viral particles. Stock viruses including GFP-, mCherry-, and LacZ-expressing lentiviral and AAV particles can be purchased. For generating custom viral particles, investigator provides high quality maxiprep of transfer plasmid to be packaged into viral particle of choice. Turn around time is about 2 weeks for lentivirus and AAV viral particles.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Facility designed to advance biological discovery through quantitative microscopy techniques. Houses multiple imaging technologies ranging from conventional widefield to state-of-the-art Super Resolution/localization microscopies.Offers N-STORM Super Resolution Microscopy,Laser Scanning Confocal Microscopy, Widefield Fluorescence Microscopy,Spinning Disc Confocal Microscopy,Total Internal Reflection Fluorescence (TIRF) Microscopy,Long-Term Imaging with Temperature, Oxygen, Carbon Dioxide, and Humidity Control,High-Content Screening,Analysis Workstation.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Offers high throughput genomics services, technical expertise and support with experimental design and protocol development. Includes Nucleic Acid Services, genetic and genomic DNA analysis with sequencing available in standard, high-throughput and next-generation formats, Genome-wide MicroArray or RNA-seq and targeted RNA analysis, Next Generation Sequencing,Drop Seq.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

GTAC offers comprehensive next generation sequencing, microarray, PCR and Bioinformatic services. In addition to generating high quality genomic, transcriptomic, and proteomic data, performs data analysis and provides technological support to users. Full service facility, from hypothesis to publication. Offers advanced analysis of microarray data. Provides free initial consultation to discuss project and offers several tiers of analysis packages to best suit your needs. NGS equipment includes NovaSeqs, Seqwell II, Oxford. Microarray expression and genotyping - all platforms.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Open source system for quantitative assessment of C. Elegans locomotory and bending behavior. Used for quantitative behavioral analyses to understand circuit and gene bases of behavior. Constantly records and analyzes position and body shape of freely moving worm at high magnification.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software package that performs several multivariate and mass univariate lesion symptom mapping analyses. Uses patient imaging lesion masks of brain insults and correlates them in multiple ways with patient behavioral and covariate data. Several permutation based SPMs are computed along with power, variance explained, and lesion coverage maps.

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• NIF
• 7 years ago - by Anonymous