Curator Dashboard

Thermo Fisher Ion Torrent Sequencer. Semiconductor based next generation sequencing system that enables simple targeted sequencing workflows. With cartridge based reagents, system is simple to use and offers scalability and flexibility. Uses Ion 5 Series chips to support broad range of forensic applications including mitochondria sequencing, STR analysis, and SNP genotyping.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Thermo Fisher Ion Torrent Sequencer. System combines semiconductor sequencing technology with natural biochemistry to directly translate chemical information into digital data. Coupled with Torrent Suite Software performs preliminary reference genome alignment and outputs data in BAM format for easy downstream analysis with optional third party analysis tools. It can also provide access to web portal for data review and sharing.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Thermo Fisher Ion Torrent Sequencer. Ion Proton System for Next-Generation Sequencing. Used for accurate high-throughput sequencing.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Sequencer can generate 1-6Tb of high quality data per day, for wide range of applications including Whole Genome Sequencing, Deep Exome Sequencing, Epigenome Sequencing, Transcriptome Sequencing, and targeted panel projects. Powered by DNBSEQTM Technology, DNBSEQ-T7 makes sequencing more efficient and productive with advances in biochemical, fluidics, and optical systems. Detection and characterization of copy number variants based on whole-genome sequencing by MGI platforms.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Sequencer developed by MGI Tech Co. Ltd. Next generation sequencing platform. Its sequencing principle relies on DNB and cPAS technologies also used in previous version of BGISEQ-500 device, but reagents for MGISEQ-2000 are refined and platform utilizes updated software. Built with new chip system that can flexibly support variety of different sequencing models.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Desktop sequencer developed by BGI. Using DNA nanoball and combinational probe anchor synthesis developed from Complete Genomics sequencing technologies, it generates short reads at large scale. BGI/MGI Sequencer.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Software tool for applying user guided nonlinear refinements (inplane) to existing, affine 2D-to-3D registration. Used for precise quantitative analysis of residual anatomical variability among test subjects after registration with QuickNII. VisuAlign is part of the QUINT workflow.

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• NIF
• 7 years ago - by Anonymous

The cytoskeleton consists of three types of cytosolic fibers: microtubules, microfilaments (actin filaments), and intermediate filaments. Globular tubulin subunits comprise the microtubule building block, with α/β-tubulin heterodimers forming the tubulin subunit common to all eukaryotic cells. γ-tubulin is required to nucleate polymerization of tubulin subunits to form microtubule polymers. Many cell movements are mediated by microtubule action, including the beating of cilia and flagella, cytoplasmic transport of membrane vesicles, chromosome alignment during meiosis/mitosis, and nerve-cell axon migration. These movements result from competitive microtubule polymerization and depolymerization or through the actions of microtubule motor proteins (1).

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• SciCrunch
• 7 years ago - submitted by Ming Shen

Software as Pairwise mApping Format reference based Scaffold anchoring and super scaffolding tool. Dsigned for mapping genome assembly scaffolds to closely related chromosome level reference genome assembly.

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• SciCrunch
• 7 years ago - submitted by Richard Edwards

Web tool as artificial neural network method that predicts phosphorylation sites in independent sequences. Web application based on determination of activity of protein kinases using in vitro assays with either naturally occurring peptides or synthetic peptides. NetPhos 3.1 server predicts serine, threonine or tyrosine phosphorylation sites in eukaryotic proteins using ensembles of neural networks. Both generic and kinase specific predictions are performed. Generic predictions are identical to predictions performed by NetPhos 2.0. Kinase specific predictions are identical to predictions by NetPhosK 1.0. NetPhos 3.1 is available as stand-alone software package.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for visualisation and quantification of DNA methylation at candidate features.

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• SciCrunch
• 7 years ago - submitted by Sara-Jayne Thursby

Software tool as novel k-FLBPCM method for detecting morphologically similar crops and weeds based on combination of contour masks and Local Binary Pattern operators.

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• RRID-Legacy
• 7 years ago - submitted by Vi Nguyen Thanh Le

Software for analyzing mouse behavior by Omnitech Electronics Inc.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software R package for automated segmentation of chronic stroke lesions. Automated segmentation algorithm capable of learning relationship between existing manual segmentations and single T1-weighted MRI.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web tool to design sgRNAs for CRISPR applications. Web tool based on CRISPy to design sgRNAs for any user-provided microbial genome. Implemented as standalone web application for Cas9 target prediction.

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• RRID-Legacy
• 7 years ago - submitted by Yaojun Tong

Calculator to estimate appropriate annealing temperature when using NEB PCR products.Tm calculator provided by New England Biolabs.

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• RRID-Legacy
• 7 years ago - submitted by Yaojun Tong

Software tool to merge multiple GenBank records using defined spacer sequence.Used to turn multiple GenBank records either in multiple files or single multi-record file into single record.

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• RRID-Legacy
• 7 years ago - submitted by Yaojun Tong

Software R package to conduct lesion-to-symptom mapping from human MRI data.Takes lesion maps and cognitive performance scores from patients with stroke, and maps brain areas responsible for cognitive deficit.

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• RRID-Legacy
• 7 years ago - by Anonymous

Optics and Imaging Company. Vieworks has developed imaging technologies for various areas and has offered solutions suitable for the digital X-ray detector, industrial camera, and in vivo imaging system.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software R package baseline correction for accurate copy number calling from 450k methylation array. Baseline correction for copy number data from cancer samples. Implements maximum density peak estimation (MDPE) method together with interactive reviewing to efficiently correct baseline in cancer samples.

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• RRID-Legacy
• 7 years ago - by Anonymous