Curator Dashboard

Software framework for image processing to obtain 3D models of macromolecular complexes using Electron Microscopy. Open-source project for integration, reproducibility and validation in 3D electron microscopy. It integrates several software packages to execute workflows combining different software tools, while taking care of formats and conversions. Electron Microscopy (3DEM). waiting for pdf from Joe

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Collection of structured and manually curated data of current therapeutic interventions in aging and age-related disease. Describes compounds and mechanisms using multiple chemical and biological databases.

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• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Software tool for a general purpose crystallographic structure refinement within the PHENIX package. Serves as a critical component in automated model building, final structure refinement, structure validation and deposition to the wwPDB.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package for advanced peptide and protein identification by tandem mass spectrometry. Allows to define unlimited number of variable modification type and allows the user to set a separate limit on the number of occurrences of each modification type.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package for processing and analysis of EM images. Appion is integrated with Leginon data acquisition but can also be used stand-alone after uploading images (either digital or scanned micrographs) or particle stacks using a set of provided tools.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for high-resolution refinement of 3D reconstructions from cryo-EM images of single particles. Used to process electron microscope images of single molecules and complexes to obtain reconstructions at the highest possible resolution.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for finding CTFs of electron micrographs. Program used for the estimation of objective lens defocus parameters from transmission electron micrographs. The program CTFFIND3 is an updated version of the program CTFFIND2. For micrographs collected on photographic film and scanned in use CTFFIND 3. For images from CCDs or direct detectors use CTFFIND 4.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

System designed for automated collection of images from a transmission electron microscope.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Web based platform that integrates several bioinformatics tools for screening and annotation of cDNA construct sequences. Translates the nucleotide sequence of the construct into an amino acid sequence, aligns the predicted sequence to a reference database of protein sequences and identifies the best protein and isoform match, annotates any variants present in the construct, and incorporates disease-associated mutations and transcriptomic data.

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• RRID-Legacy
• 8 years ago - by Anonymous

National resource for systematics research on medically important arthropods and maintainance of the U.S. mosquito collection based in the Smithsonian Institution. Provides an online repository for vector collection data and clearinghouse where individuals and organizations can contribute vector occurrence records, search for vector information, and use tools for the visualization of various vector collections.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for creation and distribution of surveys which can be taken on computers or smart phones to carry out complex research with advanced survey functionality and analytics. Qualtrics platform used to design, send and analyze surveys online.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software package to assess cell type identity using both functional and random gene sets. Used for single cell replicability analysis to quantify cell type replicability across datasets using neighbor voting.

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• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Graphical user interface to visualize EEG data. The applications can vary from scoring High Frequency Oscillations, to observing Theta and Gamma Synchrony.

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• RRID-Legacy
• 8 years ago - submitted by Syed Abid Hussaini

Web based tool to create different types of molecular interaction networks and visually explore them in a three-dimensional (3D) space (genes/proteins, microRNAs, transcription factors or metabolites).

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software R package for comprehensive analysis of metabolomics data. Contains the R functions and libraries underlying MetaboAnalyst web server, including functions for metabolomic data analysis, visualization, and functional interpretation.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software to provide control of the cell sorter from configuration and compensation setup to acquisition, sorting, and analysis, making it easy to customize the instrument for specific applications. BD implements software solutions that integrate data, devices and systems.

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• RRID-Legacy
• 8 years ago - submitted by Timothy Errington

Collection of disease maps, and mapped collection data and distribution models for arthropod disease vector species, including mosquitoes, ticks, sand flies, mites, and fleas, as well as the hosts/reservoirs of vector-borne disease pathogens. VectorMap is modeled after MosquitoMap.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for identification of Drug Target Interaction using Evolutionary and Structural features with Boosting. Used to predict drug-protein interactions.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software R package as a nonparametric statistical test to compare clustering structures with applications in functional magnetic resonance imaging data (fMRI). Used for analysis of cluster variability in the diagnosis of neuropsychological disorders.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Instrumentation for monitoring behavior and physiology in lab animals by Columbus Instruments. Used for simultaneous multi parameter assessment of 1 to 32 test animals with automated operation for experiments lasting up to three days.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth