Curator Dashboard

Software tool for multi omics pathway mapping and proteoform network generation. Open source software writen in Java to search for pathways related to a list of proteins in Reactome.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Core to facilitate the large scale expression of recombinant proteins in bacterial, insects, and mammalian cells. Serves primarily faculty and students from the laboratories in the Kasha Laboratory Building and laboratories in Biology, Biochemistry, Chemistry and Nutrition at Florida State University, Tallahassee, FL.

• Resource
• SciCrunch
• 8 years ago - submitted by Gwimoon Seo

Software to generate phased, whole genome de novo assemblies from a Chromium prepared library. Used to create true diploid de novo assemblies and can separate homologous chromosomes over long distances.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Software tool for variant calling with reference and de novo assembly of genomes. The heart of DISCOVAR is a de novo genome assembler which can generate de novo assemblies for both large and small genomes.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

System by BioNano Genomics ( formerly BioNanomatrix) which provides optical next generation mapping (NGM). Used for sequence assembly and structural variation analysis. Provides Scaffold Bionano genome mapping data with sequencing data to improve assembly contiguity, reduce sequencing coverage needed, and automatically correct errors in sequencing based assemblies.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Software application for Excel statistics.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software R package for importing pseudoaligned reads into R for use with downstream differential expression analysis. Used for import and summarize transcript level estimates for transcript and gene level analysis.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Soft­ware envi­ron­ment for custom stim­u­lus and task design as well as presen­ta­tion. Compumedics Neuroscan’s design system which can be inte­grated in fMRI, MEG, and other func­tional neuro-imaging appli­ca­tions. Provides inter­face to design and present visual and audi­tory stim­u­la­tion paradigms.

• Data Set
• dkNET
• 8 years ago - submitted by Maryann Martone

Software tool for shape-based superposition and similarity searching. Identifies new compounds with shapes (and, if desired, other properties) that are similar to the known binder.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool for correcting common structural problems and creating reliable, all atom protein models.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool for all purpose molecular modeling environment. Maestro is the portal to all of Schrödinger's computational technology. Helps researchers organize and analyze data.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software package for molecular modeling. Computes free energy changes using free energy perturbation method. Used to examine molecular conformations, molecular motion, and intermolecular interactions, such as those in a ligand-receptor complex.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool to correct and optimize the ligands by generating different protonation states, stereochemistry, tautomers, and ring conformations. Used to generate accurate, energy minimized 3D molecular structures.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software program for pKa prediction and protonation state generation for drug like molecules.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Commercial comprehensive cheminformatics computing environment. Used in discovery of novel therapeutic agents.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software Project Management (SPM) tools which contain a collection of functions that can be used at different stage of a standard massive univariate fMRI data analysis. Used to improve mass univariate analysis.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Maarten Schrooten

Software for workflow management system for de novo genome assembly of DNA sequence data.Designed to exploit high performance computing environments, such as clusters and shared memory systems.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Software that generates, analyses and compares k-mer spectra produced from sequence files. Used to quality control NGS datasets and genome assemblies.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Research core facility for advanced immunology studies including multiplex tissue and spatial analysis, high-parametric cytometry, single-cell sequencing, experimental design, sample processing, data acquisition and processing, data analysis and management.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tool to detect known and novel genes associated with disease traits and provide insights into the mechanism of these associations. Used to test the molecular mechanisms through which genetic variation affects phenotype.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth