Curator Dashboard

"Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes."

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• RRID-Legacy
• 7 years ago - by Anonymous

Atlas of brain cell types, derived from single cell RNA-Seq data from Linnarsson Lab. Can be browsed by taxon, cell type, tissue, and gene, with information on enriched genes, specific markers, anatomical location and more. Single cell gene expression atlas of mouse nervous system.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software workflow management system for automated and distributed analysis of large scale experimental data. Implemented in Java and is thus platform independent.

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• SciCrunch
• 7 years ago - submitted by Caroline Friedel

Software tool as quality control and processing pipeline for High Throughput Sequencing data. Uses tab delimited fastq format that allows for streaming from application to application. Interoperable with other standard Linux tools., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 7 years ago - submitted by Mikael Leijon

Software package to align brain slice images in atlas free manner.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

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• SciCrunch
• 7 years ago - submitted by Anita Bandrowski

Web based platform on COVID-19 to maintain predicted diagnostic, drug and vaccine candidates and computational resources on novel coronavirus SARS-CoV-2 and its resulting disease COVID-19. Provides collected and organized information from literature and other resources from internet, links to appropriate literature . Integrated multi-omics repository dedicated to current genomic, proteomic, diagnostic and therapeutic knowledge about coronaviruses. THIS RESOURCE IS A DUPLICATE OF SCR_018338

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Software image analysis platform for quantitative tissue analysis in digital pathology by Indica Labs. Used for high-throughput, quantitative tissue analysis in oncology, neuroscience, metabolism, toxicology.

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• SciCrunch
• 7 years ago - submitted by Sean Griffiths

Software tool for analysis of Alternative Splicing events and calculation of weighted transcripts per million values TPM on gene level. RNA-seq analysis method that quantifies AS events of any complexity without loss of accuracy. Used for accurate profiling AS to find misregulation present in human diseases.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as method that takes cluster results from single cell nuclei RNAseq experiments and generates lists of minimal markers needed to define each cell type cluster. Utilizes random forest of decision trees machine learning approach. Used to determine minimum set of marker genes whose combined expression identified cells of given type with maximum classification accuracy.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Collections of Addgene plasmids, open access articles, protocols, and other resource collections related to COVID-19 that may be of use to scientists. Ordering or depositing plasmids related to COVID-19 research.

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• rapid-viraldb
• 7 years ago - submitted by Jeffrey Grethe

Web page created by American Diabetes Association. Contains resources and information about COVID-19 for diabetes professionals and patients. ADA also provides online forum, webinar series and podcast. Online forum to exchange questions, answers, and best practices with leading clinicians from diabetes community. All ADA members can contribute, and any interested health professional can read forum and responses.

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• rapid-viraldb
• 7 years ago - submitted by Jeffrey Grethe

NIH’s comprehensive, curated source for publications related to COVID-19. This portfolio includes articles from PubMed and pre-prints from arXiv, medRxiv, bioRxiv, and ChemRxiv. The portfolio is updated daily with the latest available data. THIS RESOURCE IS A DUPLICATE OF SCR_018295 .

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• rapid-viraldb
• 7 years ago - submitted by Jeffrey Grethe

Curated list of open funding calls and other support for researchers, non profit organizations and commercial organizations, specifically for COVID-19 and coronavirus related research. Non profit and commercial funding opportunities relevant to COVID-19. Updated daily.

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• rapid-viraldb
• 7 years ago - submitted by Jeffrey Grethe

Data collection related to COVID-19 held at EMBL-EBI , including sequences of outbreak isolates and records related to coronavirus biology, protein expression, protein sequence, protein structure, proteome and translatome data and literature.

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• rapid-viraldb
• 7 years ago - submitted by Jeffrey Grethe

Bioinformation related to COVID-19. Site developed and maintained by China National Center for Bioinformation. Collection of sequences, genome variations, publication, clinical resource data.

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• rapid-viraldb
• 7 years ago - submitted by Jeffrey Grethe

Software tool as full text search engine for COVID-19 Open Research Dataset. Used to explore dataset and identify potential research efforts.

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• rapid-viraldb
• 7 years ago - submitted by Jeffrey Grethe

Initiative from scientific community to put all available resources including highly skilled scientists at service of fight against COVID-19.

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• rapid-viraldb
• 7 years ago - submitted by Jeffrey Grethe

Serves as clearinghouse for monoclonal antibodies against SARS-CoV-2. Database will catalog contributed antibodies in searchable resource and provide interactive analysis tools for comparisons among them. Most potent antibodies will guide development of vaccines to stop current outbreak and protect against future pandemics.

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• rapid-viraldb
• 7 years ago - submitted by Jeffrey Grethe

Web based platform on COVID-19 to maintain predicted diagnostic, drug and vaccine candidates and computational resources on novel coronavirus SARS-CoV-2 and its resulting disease COVID-19. Provides collected and organized information from literature and other resources from internet, links to appropriate literature . Integrated multi-omics repository dedicated to current genomic, proteomic, diagnostic and therapeutic knowledge about coronaviruses.

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• rapid-viraldb
• 7 years ago - submitted by Jeffrey Grethe