Curator Dashboard

Software tool to enable flexible online visualization of action potential alignment to external events. Performs spike detection based on raw Open Ephys data exported via ZeroMQ. Requires triggers from Open Ephys for histogram display as spikes are detected around them.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Sergio Martinez-Bellver

Software tool for binding free energies from Amber-generated MD trajectories. Alternative to MM-PBSA software provided by AMBER distribution. Virtual alanine mutations are also possible. Solvated interaction energies are calculated using parameters that have been fitted to reproduce binding free energies of data set of 99 protein-ligand complexes.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software open source python toolbox to analyse neuronal signals recorded in vivo in freely behaving animal, with particular emphasis on spatial coding. Can be used as application programming interface, or as general user interface, and is designed to help simplify adoption of standardised analyses for behavioural neurophysiology and facilitate open data sharing and collaboration between laboratories.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Microdrive for chronic implantation of neural probe by NeuroNexus.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Project that attempts to identify instruments used in research by assigning universal unique identifiers and standardized set of information for each piece of equipment.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Multiplexed biosignal amplifier used to record neural signal by Amplipex Ltd. Related to electrophysiology experiments with multichannel extracellular recordings in freely moving rodents.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Automatic T-maze setup to quantify various cognitive functions of animals. Single maze system by O'HARA and CO.,LTD.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Web server for modeling protein structure by using Multiple Mapping Method. Approach to sequence-to-structure alignment in comparative protein structure modeling.

• Resource
• SciCrunch
• 7 years ago - by Anonymous

Software tool to visualize 4C data.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Open source software application with data analysis tools and spreadsheet templates used to manage, process and visualize data. LibreOffice Calc is spreadsheet component of LibreOffice software package developed by Document Foundation.

• Resource
• SciCrunch
• 7 years ago - by Anonymous

Camera raw data processing software. Cloud-based service to edit, organize, store, and share photos across any device.

• Resource
• SciCrunch
• 7 years ago - by Anonymous

Software tool to collect vulnerable source code from open-source repositories linked to SonarCloud. Dataset repository with tagged files with BufferOverflow features associated to source code repositories publicly available.

• Resource
• SciCrunch
• 7 years ago - by Anonymous

Web based interactive annotation and filtering platform that automatically annotates variants with allele frequencies, functional impact, pathogenicity predictions and pathway information. Allows filtering by all annotations, under dominant, recessive or de novo inheritance models. Flexible annotation and filtering portal for next generation sequencing data.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Colaboratory is product from Google Research. Allows anybody to write and execute arbitrary python code through browser, and is especially well suited to machine learning, data analysis and education. Colab is hosted Jupyter notebook service that requires no setup to use, while providing free access to computing resources including GPUs.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Technique for Natural Language Processing pre-training developed by Google. Pre-training of Deep Bidirectional Transformers for Language Understanding. Language representation model designed to pre-train deep bidirectional representations from unlabeled text by jointly conditioning on both left and right context in all layers.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Integrated platform to analyse, store, visualise and interpret CopyNumber Variation data. Analysis is supported for Illumina data, all CNV-reports and raw data can be imported after third-party analysis. Platform to streamline processing and downstream interpretation of microarray data in clinical context. Analysis tools include CNV analysis, parent of origin and uniparental disomy detection. Interpretation tools include data visualisation, gene prioritisation, automated PubMed searching, linking data to several genome browsers and annotation of CNVs based on several public databases.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

High-throughput sequencing system. Support of instrument and supply reagents will be provided through February 28th, 2023. Other instruments that support same applications as HiSeq 1500 System are available. Use Sequencing Platform Comparison Tool to find the best instrument for your needs.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software package that autonomously diagnoses rare diseases from next generation sequencing NGS data using artificial intelligence by Diploid.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software R package provides tools to infer proportions of priori known cell-types present in sample representing mixture of such cell-types. Comparison of reference based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Illumina HumanMethylation data on sorted blood cell populations.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous