Curator Dashboard

Websever for gene set enrichment analysis of plants. Used for interpreting biological meaning of a list of genes by computing the overlaps with various previously defined gene sets.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Collection of annotated gene sets for use with Gene Set Enrichment Analysis (GSEA) software.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Simulator independent language for unambiguous description of spiking neuronal network models that aims to facilitate model sharing, portability, and re-usability. Used as a model description language for neuroscience.

• Resource
• NIF
• 8 years ago - submitted by Maryann Martone

Software tool for quantitative visualization of aligned RNA-Seq reads that enables quantitative comparison of exon usage across samples or experimental conditions.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool to discover short, ungapped motifs (recurring, fixed-length patterns) that are relatively enriched in sequences compared with shuffled sequences or control sequences (sample output from sequences).

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software R package for fitting generalized linear mixed models (GLMMs) using AD Model Builder. Fits mixed-effects models to count data using Poisson or negative binomial response distributions.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package to predict metagenome functional content from marker gene (e.g., 16S rRNA) surveys and full genomes. Used to predict which gene families are present and then combines gene families to estimate the composite metagenome.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Aleksandar Kostic

Histological brain section series aligner to volumetric atlases. Software tool for user guided affine registration (anchoring) of 2D experimental image data, typically high resolution microscopic images, to 3D atlas reference space, facilitating data integration through standardized coordinate systems. Part of the QUINT workflow.

• Resource
• NIF
• 8 years ago - submitted by Matt Travers

The University of Münster is a public university located in the city of Münster, North Rhine-Westphalia in Germany. It is Germany fifth largest university.

• Organization
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Web tool for analysis of MinION (ONT) long sequencing reads. Used for analysis of reads generated by the Oxford Nanopore sequencing devices. Provides alignments to any target of interest, alignment statistics and information about polymorphisms.

• Resource
• SciCrunch
• 8 years ago - submitted by IoB Institute of Bioinformatics

Software tool for the analysis of EEG and MEG event-related scalp field data using global randomization statistics.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tool as an European Data Format EDF/EDF+ viewer and manual sleep scoring program. Used in EEG and Sleep investigations, but can be used for almost any (also non-medical) sequential time series and event lists.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software genome-wide tool to predict transcript biomarkers of gene essentiality in cancer. This tool can be used to predict new potential target genes with their corresponding biomarkers (either transcript or gene expression).

• Resource
• SciCrunch
• 8 years ago - submitted by Fernando Carazo

Software Python package as a semiparametric test for enrichment in ranked lists. Used for determining gene set enrichment.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool as a code to support figure generation for the manuscript by Roth, Muench et al. Used to perform analysis.

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• RRID-Legacy
• 8 years ago - by Anonymous

Instrument designed for cryosectioning in biomedical, neuro-anatomical and pharmaceutical research.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software designed for simultaneous detection of connected subnetworks of an interaction network where genes exhibit conserved alteration patterns across tumor samples.

• Resource
• SciCrunch
• 8 years ago - submitted by Ermin Hodzic

P-97 Flaming / Brown Micropipette Puller is an instrument for fabricating micropipettes, patch pipettes and microinjection needles with improvements in mechanical, electronic and software design for better control of the pulling process and a higher degree of reproducibility.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

ECM 830 is a square wave pulse generator designed for in vitro and in vivo applications for gene, drug and protein delivery for mammalian cells, zebra fish tissue and embryos, nuclear transfer, embryo manipulation, plant protoplast and basic bacteria and yeast transformations. Used in ECM 830 SQUARE WAVE ELECTROPORATION SYSTEM.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous