Curator Dashboard

Real time PCR

• Resource
• RRID-Legacy
• 7 years ago - submitted by Zhou Ju

real time PCR

• Resource
• RRID-Legacy
• 7 years ago - submitted by Zhou Ju

Software R package for integrating and analyzing multiple single-cell datasets. It relies on integrative non-negative matrix factorization to identify shared and dataset-specific factors. Used for analysis of multiple scRNA-seq data sets.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software R package as hierarchical, iterative clustering for analysis of transcriptomics data.Used for single cell RNA-seq analysis for transcriptomic type characterization from Allen Institute.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software tool to detect doublets in single-cell RNA-seq data. Software algorithm to remove doublets. Python code for identifying doublets in single-cell RNA-seq data. Framework for predicting impact of multiplets in given analysis and identifying problematic multiplets.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software tool as module for working with snap files in Python. Snap files are designed for storing single nucleus ATAC-seq datasets.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software R package for computing and annotating genomic ranges. Used for storing and manipulating genomic intervals and variables defined along genome.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Benchtop fluorometer designed to accurately measure DNA, RNA, and protein quantity. Measures RNA integrity and quality. Touch screen to select and run assays with results displayed in few seconds.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Liquid handling instrument designed to optimize dependability and walk-away time. Biomek i7 Hybrid with enclosure has up to 45 deck positions and includes both Multichannel and Span-8 pipette heads in enclosed work space.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Semi automated pipetting system by Mettler Toledo. Instrument for semi-automated 96/384-well plate pipetting. Semi-Automated 96/384-Well Pipetting System where pipetting options range from 0.5 uL to 1000 uL.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Swinging bucket benchtop centrifuge. Eppendorf 5920 R refrigerated centrifuge.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Fluorescence activated cell sorting instrument by BD Biosciences. Flow cytometer as high speed fixed alignment benchtop cell sorter. Cytometer can be operated at varied pressures and can acquire up to 70,000 events per second. Enables multicolor analysis of up to 13 fluorescent markers and two scatter parameters at time., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software Python pipeline for linear and circular RNAs of known fusions exploration. Pipeline for exploring linear transcripts and circRNAs of known fusions based on RNA-Seq data. Known fusion genes are from multiple databases like COSMIC, ChimerDB, TicDB, FARE-CAFE and FusionCancer or user-added gene-pairs.

• Resource
• SciCrunch
• 7 years ago - submitted by HaiYun Wang

The simulator art_illumina function in ART was applied to generate simulated RNA-Seq data. Using the RNA-Seq reads in normal pulmonary microvascular endothelial cells from the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database SRR349695 as the background, we plugged the simulated fusion reads into the background reads. Two types of fusion reads were designed, with the first one from the linear transcripts and the second one from the linear and circular pooled transcripts. Different sequencing coverage including 20X, 50X, 100X, each with two read lengths of 50 bp and 100 bp were designed in the simulated data. It was designed as the benchmark data for fusion RNA and fusion-circ RNA identification.

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• SciCrunch
• 7 years ago - submitted by HaiYun Wang

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to calculate various physicochemical parameters for given protein stored in Swiss-Prot or TrEMBL or for user entered protein sequence. Protein can either be pecified as Swiss-Prot/TrEMBL accession number or ID, or in form of raw sequence. Computed parameters include molecular weight, theoretical pI, amino acid composition, atomic composition, extinction coefficient, estimated half-life, instability index, aliphatic index and grand average of hydropathicity.

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• RRID-Legacy
• 7 years ago - by Anonymous

Database of genes related to Repeat Expansion Diseases, as comprehensive manually curated database that covers all reported repeat expansion diseases included in PubMed and OMIM. Detailed information about each repeat and its related genes/diseases can be found in database, links to OMIM, NCBI and Ensembl are also provided. Provides list of predicted genes containing unstable tandem repeats that may cause diseases via abnormal repeat expansion by support vector machine and random forest.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software suite for population epigenetics integrated into Galaxy. Galaxy Docker repository for population epigenetics data analysis.

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• SciCrunch
• 7 years ago - submitted by Krzysztof Poterlowicz

Software tool for statistics and data visualization by Red Rock Software, Inc. Provides unparalleled chart selection, data analysis and graph customization capabilities.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software R package to import excel files into R. Has no external dependencies for easy installment and use on all operating systems. Designed to work with tabular data.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous