Curator Dashboard

Software Java tools for analyzing Drop-seq data. Used to analyze gene expression from thousands of individual cells simultaneously. Analyzes mRNA transcripts while remembering origin cell transcript.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for chromatin state discovery and characterization. Used for chromatin state discovery and genome annotation of non coding genome using epigenomic information across one or multiple cell types. Combines multiple genome wide epigenomic maps, and uses combinatorial and spatial mark patterns to infer complete annotation for each cell type. Provides automated enrichment analysis of resulting annotations.

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• RRID-Legacy
• 7 years ago - by Anonymous

Open source software tool for automatically converting flow cytometry data from arbitrary to calibrated units. Can be run using intuitive Microsoft Excel interface, or customizable Python scripts. Software accepts Flow Cytometry Standard (FCS) files as inputs and is compatible with different calibration particles, fluorescent probes, and cell types. Automatically gates data, calculates common statistics, and produces plots.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software Python tool for large scale single cell gene expression data analysis. Integrates analysis possibilities of established R-based frameworks, provides pre processing, visualization, graph-drawing and diffusion maps, clustering, identification of marker genes for clusters via differential expression tests and pseudo temporal ordering via diffusion pseudo time.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software Python package for machine learning, statistics and data mining. Contains library of statistical and machine learning routines for analyzing astronomical data in Python, loaders for several open astronomical data sets, and examples of analyzing and visualizing astronomical data sets. Repository of common tools and routines used for statistical data analysis in astronomy and astrophysics.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as online calculator of molecular weight of proteins in dilute solution from experimental SAXS data measured on relative scale. Software package for easy processing of small angle X ray scattering data from mono disperse systems in diluted solution.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web server for predicting rigid protein parts and flexible hinge regions connecting them in native topology of protein chains by employing elastic network (EN) models. Automated prediction of hinges in protein structures.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for checking data before submitting to wwPDB. Stand alone validation server. Service designed to help to check model and experimental files prior starting data deposition.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to implement pre-assembly binning scheme leveraging sparse dictionary learning and matrix factorization to solve sparse decomposition problems arising in field of metagenomics.

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• SciCrunch
• 7 years ago - submitted by Thomas Brüls

rabbit anti-Caspase-3 (1:2000; Abcam Cat# ab184787) used for western blot

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• SciCrunch
• 7 years ago - submitted by Wenkai Chang

Software Python tool as data visualization library based on matplotlib. Provides interface for drawing attractive and informative statistical graphics. Statistical data visualization using matplotlib.

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• RRID-Legacy
• 7 years ago - submitted by Marin Manuel

Cholera toxin conjugates are made from a recombinant version of the B subunit only. This allows us to provide a very high-purity product that is completely free of the toxic A subunit. Cholera toxin B subunit (CT-B) attaches to cells by binding to ganglioside GM1, making it a powerful tool for retrograde labeling of neurons.

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• RRID-Legacy
• 7 years ago - submitted by Marin Manuel

Galaxy CLIP-Explorer can process large CLIP-Seq data of eCLIP, iCLIP, and with simple changes to the iCLIP workflows also FLASH, and uvCLAP. Software tools to process and visualise RNA protein interactions.

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• SciCrunch
• 7 years ago - submitted by Florian Heyl

Software package for analysis of trends using joinpoint models where several different lines are connected together at joinpoints. There are two versions available. Desktop version has graphical user interface and is for interactive use. Command-line version is for use in batch mode or called from other software, such as SAS or R.

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• RRID-Legacy
• 7 years ago - by Anonymous

Webserver to process, analyse and visualise CLIP-Seq data. Software tools to process and visualise RNA protein interactions. CLIP-Seq data analysis in Galaxy. Galaxy CLIP-Explorer can process large CLIP-Seq data of eCLIP, iCLIP, and with simple changes to iCLIP workflows also FLASH, and uvCLAP.

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• SciCrunch
• 7 years ago - submitted by Florian Heyl

Software tool as conserved synteny block construction method for multiple whole-genome alignments. Implementation of DAG-based for reconstruction of synteny blocks from genome alignment.

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• SciCrunch
• 7 years ago - submitted by Ksenia Krasheninnikova

Software package for hydrodynamic data from analytical ultracentrifugation experiments. Features integrated data editing and analysis environment with portable graphical user interface. Provides resolution for sedimentation velocity experiments using high-performance computing modules for 2-dimensional spectrum analysis, genetic algorithm, and for Monte Carlo analysis.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web server for analysis of protein circular dichroism spectra. Provides access to circular dichroism secondary structure calculation algorithms and reference databases. Used in analysis of protein secondary structures.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to draw CGO cylinder representing rotation axis for given transformation. Useful for drawing axes of rotational symmetry in oligomeric assembly.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as fully automated protein structure homology modeling server, accessible via ExPASy web server, or from program DeepView Swiss Pdb-Viewer. Structural bioinformatics web-server dedicated to homology modeling of 3D protein structures. Used to make protein modelling accessible to all biochemists and molecular biologists.

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• RRID-Legacy
• 7 years ago - by Anonymous