Curator Dashboard

Free online archive and distribution server for complete but unpublished manuscripts in the medical, clinical, and related health sciences. Preprints are preliminary reports of work that have not been certified by peer review. They should not be relied on to guide clinical practice or health related behavior and should not be reported in news media as established information. Research articles, systematic reviews and meta analyses, clinical research design protocols and data articles may be posted.

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• dkNET
• 6 years ago - submitted by Jeffrey Grethe

Software environment that includes tools and integrations for professional Python and Web development. Integrated Development Environment by JetBrains. Used for development in Python and frameworks like DJango. Can be customized with themes and plugins.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web resource for immunoglobulins (IG), T cell receptors (TR) and major histocompatibility (MH) and related proteins of immune system (RPI). Comprises LIGM expertized data on immunoglobulins (IG), T cell receptors (TR) and major histocompatibility (MH) and related proteins of immune system.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web server for structure validation in homology modeling. Used to validate of obtained crude models. Structure analysis and validation server.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software R Package that provides parameter-free method for optimizing trade-off between resolution of clusters and their replicability across datasets. Dune method takes as input set of clustering results on dataset, and iteratively merges clusters within those clusterings in order to maximize their concordance. Iterative merging of clusters to improve mean ARI

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software package as dimension reduction technique that can be used for visualization similar to t-SNE, but also for general non-linear dimension reduction. Used for dimensionality reduction for visualizing single-cell data.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool to create tar archives, as well as various other kinds of manipulation. Used to extract files, to store additional files, or to update or list files which were already stored. Can direct its output to available devices, files, or other programs, can access remote devices or files.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool as non interactive command line text editor. Command line that works with streams of characters for searching, filtering and text processing. Used for extracting part of file using pattern matching or substituting multiple occurrences of string within file.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software Python package for data analysis providing labeled data structures similar to R data. Provides data structures designed to make working with relational or labeled data. Software as building block for doing practical, real world open source data analysis and manipulation tool.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software Python package that wraps kallisto and bustools single-cell RNA-seq workflow. Used for single-cell RNA-seq pre-processing. Simplifies downloading and running of kallisto and bustools programs. Consists of kb ref and kb count commands. kb ref builds or downloads species specific index for pseudo alignment of reads and must be run prior to kb count and it runs kallisto index. kb count runs kallisto and bustools programs and is used for pre-processing of data from variety of single-cell RNA-seq technologies, and for number of different workflows (e.g. production of gene count matrices, RNA velocity analyses, etc.).

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool to searches one or more input files for lines containing a match to a specified pattern. Prints lines that contain match for one or more patterns. Command-line utility for searching plain-text data sets for lines that match regular expression. When finds match, it copies line to standard output (by default), or produces whatever other sort of output you have requested with options.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool to select particular records in file and perform operations upon them. awk utility interprets special purpose programming language that makes it possible to handle simple data reformatting jobs with few lines of code. Source code for latest release of GNU awk is available from GNU project ftp server and its many mirrors.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool for manipulating BUS files for single cell RNA-Seq datasets. Used to error correct barcodes, collapse UMIs, produce gene count or transcript compatibility count matrices, and is useful for many other tasks.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool that provides scalable way of keeping track of data and learned annotations. Initially built for Scanpy. Used as generic class for handling annotated data matrices. Stores data matrix with annotations of observations (samples, cells) and variables (features, genes), and unstructured annotations.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Computed tomography system designed to achieve precise inspection results for wide range of applications by YXLON. Available in single or dual tube configuration, it is perfect for very small to medium sized parts inspection in automotive, electronics, aviation, and material science industries.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as Galaxy wrapper providing GUI for Circos tool. Circos allows visualizing data in circular format.

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• SciCrunch
• 6 years ago - by Anonymous

Core assists investigators whose research requires molecular marker characterization of cells in suspension as well as isolation of cells based on those markers. Advanced cell sorting and cytometric analyses by Flow or Mass Cytometry are provided.

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• RRID-Legacy
• 6 years ago - submitted by Nate Herzog

Core provides molecular biotechnology services and current molecular genetic methods. Services include DNA and RNA Extraction, transgenic mouse genotyping, Human Cell line Authentication, Sanger DNA Sequencing, Next-Generation sequencing platforms, Microsatellite DNA Typing, Agena multiplex SNP Genotyping, Real-time PCR, NanoString Gene Expression Analysis. Specializes in custom workflows that couple services with specific research needs.

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• RRID-Legacy
• 6 years ago - submitted by Nate Herzog

GTAC offers comprehensive next generation sequencing, microarray, PCR and Bioinformatic services. In addition to generating high quality genomic, transcriptomic, and proteomic data, performs data analysis and provides technological support to users. Full service facility, from hypothesis to publication. Offers advanced analysis of microarray data. Provides free initial consultation to discuss project and offers several tiers of analysis packages to best suit your needs. NGS equipment includes NovaSeqs, Seqwell II, Oxford. Microarray expression and genotyping - all platforms.

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• RRID-Legacy
• 6 years ago - submitted by Nate Herzog

Chemical inventory for occupational chemical information. Collects information from several government agencies and organizations. Includes information about identification and physical properties, exposure limits, sampling.

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• RRID-Legacy
• 6 years ago - by Anonymous