Curator Dashboard

Software package for sweep based data acquisition and analysis of time based waveform data obtained through CED digital analogue converter by Cambridge Electronic Design System Limited. Used for transient capture, patch and voltage clamp, LTP studies, evoked response and TMS.

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• RRID-Legacy
• 8 years ago - by Anonymous

Web tool to explore genotyping metdata by filtering it on basis of variant features, including functional annotations and matching genotype patterns. May be deployed on workstation or as data portal. Allows to feed MongoDB database with VCF, PLINK or HapMap files and provides interface to filter data in real time. Used to export filtered data into formats and features connectivity with online genomic tools and with standalone software such as FlapJack or IGV. Gigwa hosted datasets are interoperable via two standard REST APIs such GA4GH and BrAPI.

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• SciCrunch
• 8 years ago - submitted by Guilhem Sempéré

Machine learning repository for microbiome datasets.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool to assemble bacterial isolate genomes from Illumina paired end reads. Used for isolate data only, primarily small haploid organisms. Supports assemblers like SKESA, Velvet and Megahit.

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• RRID-Legacy
• 8 years ago - submitted by Dan Fornika

Software framework to collect and analyze computational resource usage of workflow runs based on common workflow language CWL. Used to share set of tools packaged in containers. Enables users to choose proper cloud instance for workflow runs based on run time metrics data. Operating system Unix/Linux.

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• SciCrunch
• 8 years ago - by Anonymous

Software package to predict ribosomal RNA genes in full genome sequences by utilising two levels of Hidden Markov Models. Consistent and rapid annotation of ribosomal RNA genes.

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• SciCrunch
• 8 years ago - submitted by Julien Bane

Project between Inria, Inserm, CNRS, and University of Rennes for biomedical image analysis for understanding neurological disease. Used to diagnose, monitor and deliver treatment for mental, neurological and substance use disorders by establishing multidisciplinary team between information sciences and medicine in medical imaging, neuroinformatics and population cohorts.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Source code used in the analysis of GC MS data from rice samples. Workflow for statistical analysis of GC MS data from field grown rice exposed to combined drought and heat stress.

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• SciCrunch
• 8 years ago - submitted by Lovely Mae Lawas

Open source scripts for medical image processing. Provides set of scripts in Python shell. These scripts use essentially tools from Anima to perform more complex series like image preprocessing, model estimation, atlas creation.

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• SciCrunch
• 8 years ago - submitted by Olivier Commowick

List of diseases and conditions on Centers for Disease Control and Prevention website., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software toolbox for performing Non-negative Matrix Factorization (NMF) and several variants. Used to factorize one non negative matrix into two non negative factors, that is basis matrix and coefficient matrix. Applied in bioinformatics as data mining approach.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for unsupervised discovery of sequential structure. Used to detect sequences in neural data generated by internal behaviors, such as animal thinking or sleeping. Used for unsupervised discovery of temporal sequences in high dimensional datasets in neuroscience without reference to external markers.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software R package for gene set enrichment or pathway analysis. Applicable independent of microarray or RNAseq data attributes including sample sizes, experimental designs, assay platforms, and other types of heterogeneity. Pipeline routines of multiple GAGE analyses in batch, comparison between parallel analyses, and combined analysis of heterogeneous data from different sources and studies.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool as plugin for ImageJ. Counts the number of 3D objects in stack, quantifies for each found object, generates results representations.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool as plugin for ImageJ. Used for 3D objects and image can be segmented directly within plugin via 3D segment button.

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• RRID-Legacy
• 8 years ago - by Anonymous

C. elegans RNAi feeding library distributed by Source BioScience Ltd. Designed for genome wide study of gene function in C. elegans through loss of function studies.

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• RRID-Legacy
• 8 years ago - by Anonymous

Data collection of CBP/p300 regulated acetylome, proteome, and transcriptome in murine embryonic fibroblasts. Composed of Symbol search for quantified acetylation sites, proteins and transcripts abundance in CBP/p300, Domain search for batch query of proteins by specific domain and Conserved sites for acetylation sites that are conserved between mouse and human, and their regulation in KATi treated cells.

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• dkNET
• 8 years ago - by Anonymous

Private research institute in Turin, Italy. Research programs in immunogenetics, functional genomics, genomic epidemiology, tumour diagnostic and prognostic biomarker research, epigenetic modifications in disease, quantitative biology and computational neuroscience.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Robotics research tool designed to make quantitative neurological assessments of sensorimotor, proprioception, and cognitive brain function by BKIN Technologies. Robotic manipulandum with display for studying arm movements. Allows to assess coordination of limbs at multiple joints while measuring joint specific force.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software Python tool for high throughput sequencing analysis, focused on high reliability, modularity and customisability.

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• RRID-Legacy
• 8 years ago - submitted by Edoardo Morandi