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tidyr
Software R package for easily tidy data with spread and gather functions. Used for simplifying process of creating tidy data.
- Resource
- RRID-Legacy
- 8 years ago - by Anonymous
Aspen Plus
Software process modeling tool for conceptual design, optimization, and performance monitoring for chemical, polymer, specialty chemical, metals, minerals, and coal power industries.
- Resource
- RRID-Legacy
- 8 years ago - by Anonymous
PAGODA
Software tool for analyzing transcriptional heterogeneity to detect statistically significant ways in which measured cells can be classified. Used to resolve multiple, potentially overlapping aspects of transcriptional heterogeneity by testing gene sets for coordinated variability among measured cells.
- Resource
- SciCrunch
- 8 years ago - submitted by Edyta Vieth
battenberg
Software R package for subclonal copy number estimation.
- Resource
- SciCrunch
- 8 years ago - submitted by Edyta Vieth
American multinational technology company that specializes in internet related services and products, which include online advertising technologies, search engine, cloud computing, software, and hardware. Considered one of Big Four technology companies, alongside Amazon, Apple and Facebook.
- Organization
- SciCrunch
- 8 years ago - submitted by Edyta Vieth
golang
Software tool as open source programming language to build simple, reliable, and efficient software. Developed by team at Google and many contributors from open source community.
- Resource
- SciCrunch
- 8 years ago - submitted by Edyta Vieth
PseudoFuN
Software as database and query tool for homologous pseudogene and coding gene families. Collection of human pseudogenes and gene associations. Supports search, graphical visualization and functional analysis of pseudogenes and coding genes based on PGG families.
- Resource
- SciCrunch
- 8 years ago - submitted by Travis Johnson
pagoda2
Software R package for analyzing and interactively exploring large single cell RNAseq datasets.
- Resource
- SciCrunch
- 8 years ago - submitted by Edyta Vieth
dndSCV
Software R package as suite of dN/dS methods to quantify selection in cancer and somatic evolution. Contains functions to quantify dN/dS ratios for missense, nonsense and essential splice mutations, at level of individual genes, groups of genes or at whole genome level. Used to detect cancer driver genes on datasets.
- Resource
- SciCrunch
- 8 years ago - submitted by Edyta Vieth
cgpBattenberg
Software tool as installation helper, perl wrapper and R program Battenberg which detects subclonality and copy number in matched NGS data.
- Resource
- SciCrunch
- 8 years ago - submitted by Edyta Vieth
BRASS
Software tool for analysis of one or more related BAM files of paired end sequencing to determine potential rearrangement breakpoints. Identifies breaks and attempts to assemble rearrangements.
- Resource
- SciCrunch
- 8 years ago - submitted by Edyta Vieth
cgpPindel
Software tool as cancer genome project insertion or deletion detection workflow for Pindel.
- Resource
- SciCrunch
- 8 years ago - submitted by Edyta Vieth
CaVEMan
Software tool as single nucleotide variant expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired tumour and normal cancer samples. Algorithms for calling somatic mutations.
- Resource
- SciCrunch
- 8 years ago - submitted by Edyta Vieth
mzStudio
Software tool for proteomics data analysis, visualization, and notebook application. Dynamic digital canvas for user driven interrogation of mass spectrometry data. Operating system Unix/Linux, Windows.
- Resource
- SciCrunch
- 8 years ago - submitted by Edyta Vieth
Haystack
Software suite of computational tools implemented in Python to study epigenetic variability, cross cell type plasticity of chromatin states and transcription factors motifs providing mechanistic insights into chromatin structure, cellular identity and gene regulation. Epigenetic variability and transcription factor motifs analysis pipeline.
- Resource
- SciCrunch
- 8 years ago - submitted by Edyta Vieth
SciPipe
Software tool for writing scientific workflows of shell commands that depend on each other in Go programming language. Workflow library for agile development of complex and dynamic bioinformatics pipelines. Used in bioinformatics and cheminformatics, but works for any problem involving pipelines of commandline applications.
- Resource
- SciCrunch
- 8 years ago - submitted by Samuel Lampa
metagear
Software R package for research synthesis taxonomy from applying systematic review approach to assemble and screen literature, to extract data from studies, and to summarize and analyze these data with statistics of meta analysis.
- Resource
- RRID-Legacy
- 8 years ago - by Anonymous
Scikit-Criteria
Software tool as collection of Multiple Criteria Decision Analysis methods integrated into scientific Python stack.
- Resource
- RRID-Legacy
- 8 years ago - by Anonymous
Prophet
Open source software package for producing forecasts for time series data that has multiple seasonality with linear or non linear growth. Implemented in R or Phyton.
- Resource
- RRID-Legacy
- 8 years ago - by Anonymous
Surface Modified Amperometry CMOS IC
Integrated circuit device used as tool for amperometry measurement as replacement of conventional carbon fiber microelectrode. Surface modified structures with SU 8 microwells increases life span of each individual device and achieves single cell measurement efficiency by trapping cells inside microwells.
- Resource
- RRID-Legacy
- 8 years ago - by Anonymous
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