Curator Dashboard

Core provides consultation, training, software and educational tools in bioinformatics and graphics.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Provides bioinformatics services to research groups in Babraham Institute, United Kingdom and external commercial consultancy service. Provides assistance in genomics, proteomics, statistics, microarrays, and custom software development.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Central unit for bioinformatics and omics technologies of University of Tübingen, Medical Faculty and Max Plank for Developmental Biology. Through partnering with on campus core facilities, offers services on full range of omics technologies. Data generation is complemented by integrated bioinformatics analyses, and all high throughput data is managed centrally.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Platform to provide tutorials and resources in experimental design and data analysis to researchers interested in using optical mapping data.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Provides services of consultation and data analysis, with focus on Next Generation Sequencing and other high throughput experiments, software and database development, and training in basic and advanced bioinformatics techniques. Services provided for fee to support collaborative grant funded investigations.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Core provides bioinformatics services for researchers at University Medical Center Hamburg Eppendorf and related institutions. Focusing on high throughput sequencing data. Services include data analysis, consulting, software development, and bioinformatical training.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Software package for optical mapping data processing, analysis and visualization. Used to handle and explore large scale optical mapping profiles.

• Resource
• SciCrunch
• 7 years ago - submitted by Alden Leung

Fluorescence microscopy system by Bruker. Multiphoton imaging system for intravital imaging applications in neuroscience, oncology and immunology using Bruker Prairie View software to provide turnkey operation for imaging as well as synchronizing Ultima system with external stimulus and experimental control devices.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software suite as top view based behavior analysis system by CleverSys Inc. Uses animal body parts to provide behavior analysis results. Used in experiments with animal tracking task.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Ethan Badger

Software tool that creates data sets with particular characteristics. Method and open source software for simulating complex biological and biomedical data to aid in comparing and evaluating machine learning methods.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anh Nguyet Vu

Open source software Python package to compare relief based feature selection algorithms used in data mining. Used for feature selection in any bioinformatics problem with potentially predictive features and target outcome variable, to detect feature interactions without examination of all feature combinations, to detect features involved in heterogeneous patterns of association such as genetic heterogeneity .

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anh Nguyet Vu

Python wrapper for Penn Machine Learning Benchmark data repository. Large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms. Part of PyPI https://pypi.org/

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anh Nguyet Vu

Open source resources to execute stop signal task and analyze resulting data. Simulation code is provided, and can be used in planning stage for investigation of response inhibition and impuls control.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Repository software for targeted mass spectrometry assays from Skyline. Targeted proteomics knowledge base. Public repository for quantitative data sets processed in Skyline. Facilitates viewing, sharing, and disseminating results contained in Skyline documents.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Clinical proteomic tumor analysis consortium to systematically identify proteins that derive from alterations in cancer genomes and related biological processes, in order to understand molecular basis of cancer that is not possible through genomics and to accelerate translation of molecular findings into clinic. Operates through Proteome Characterization Centers, Proteogenomic Translational Research Centers, and Proteogenomic Data Analysis Centers. CPTAC investigators collaborate, share data and expertise across consortium, and participate in consortium activities like developing standardized workflows for reproducible studies.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Web user interface for visualizing clustering of multivariate data. Web server allows users to upload their own data and create Principal Component Analysis plots and heatmaps.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software Python package that implements preprocessing pipeline for imaging mass cytometry data. Can convert IMC raw files to tiff files that are used as inputs into CellProfiller, Ilastik, Fiji etc.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anh Nguyet Vu

Device to control spatial and temporal variations in oxygen tensions to better replicate in vivo biology. Consists of three parallel connected tissue chambers and oxygen scavenger channel placed adjacent to these tissue chambers. Provides consistent control of spatial and temporal oxygen gradients in tissue microenvironment and can be used to investigate important oxygen dependent biological processes present in cancer, ischemic heart disease, and wound healing.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anh Nguyet Vu

System to extend constant distance mode mass spectrometry imaging using nanospray desorption electrospray ionization by integrating shear force probe with nano DESI probe to improve imaging capabilities. Used for imaging biological samples of complex topography in their native states. Enables ambient imaging of biological samples with high sensitivity and minimal sample pretreatment.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anh Nguyet Vu

Nanodroplet processing platform for deep and quantitative proteome profiling of 10 to 100 mammalian cells. It enhances efficiency and recovery of sample processing by downscaling processing volumes.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anh Nguyet Vu