Curator Dashboard

Center is part of University of British Columbia Faculty of Medicine, located at British Columbia Children Hospital Research Institute (BCCHR) in Vancouver, British Columbia, Canada. Research at CMMT is focused on discovering genetic susceptibility to illnesses such as Huntington Disease, Type 2 diabetes and bipolar disorder.

• Organization
• SciCrunch
• 7 years ago - submitted by Ethan Badger

Contract research organization that provides genetically engineered mouse models (GEMMs) and services to global preclinical Research and Development communities. Specializes in developing animal models using cutting edge gene-editing technologies with large collection of cKO/KO (conditional knockout/knockout) mice, humanized mice, immunodeficient mice, and germ-free mice.Provides preclinical services, including mouse model customization, pharmacology services such as drug efficacy testing and mouse phenotyping, CRISPR/Cas9 gene-editing, cryopreservation, rapid expansion, and customized breeding.

• Organization
• SciCrunch
• 7 years ago - submitted by Ethan Badger

Core facility for cystic fibrosis mouse strains. Services include mouse production from current strains and creation of new strains, mouse strain maintenance, tissue acquisition, genotyping and treatment of mice with IACUC approved drugs to test potential therapies. Maintains centralized database that contains breeding history, phenotypes observed and experimental records of various CF mouse strains.

• Organization
• SciCrunch
• 7 years ago - submitted by Ethan Badger

Software R package to measure reproducibility of findings identified from replicate experiments and to provide highly stable thresholds based on reproducibility.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as catalog of inferred sequence binding preferences. Online library of transcription factors and their DNA binding motifs.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software package for analysis of sequencing data. Command line based bioinformatics suite to analyze biological data acquired through biological experiments.

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• RRID-Legacy
• 7 years ago - by Anonymous

Open source and stand alone software for assessing vascular reactivity. Used in pressure myograph system.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software package for implementation of Pairwise Sequentially Markovian Coalescent model. Infers population size history from diploid sequence.

• Resource
• SciCrunch
• 7 years ago - submitted by Jie Yang

Software application as probabilistic multiple alignment program for DNA, codon and amino-acid sequences. Allows for defining potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences.

• Resource
• SciCrunch
• 7 years ago - submitted by Jie Yang

Software tool as 3D de novo assembly (3D DNA) pipeline. Used to help generate HI-C assembly.

• Resource
• SciCrunch
• 7 years ago - submitted by Jie Yang

Software platform for analyzing kilobase resolution Hi-C data. Open source tool for analyzing terabase scale Hi-C datasets. Allowes to transform raw sequence data into normalized contact maps.

• Resource
• SciCrunch
• 7 years ago - submitted by Jie Yang

Software tool as de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies. It assembles raw reads without error correction and then builds consensus from intermediate assembly output. Desiged to assemble huge genomes in very limited time.

• Resource
• SciCrunch
• 7 years ago - submitted by Jie Yang

Cloud based web platform connecting researchers, research organisations, funders and publishers in automated workflow management tool. Platform provides infrastructure for researchers, funders and publishers participating in Open Access Publishing. Features searchable database of journals compliant with research funders Open Access policies, connects researchers directly to journals submission systems, coordinates open access fee payments for funder with publisher upon acceptance, and supports compliancy by overseeing deposition of papers to designated repositories.

• Resource
• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Web application for real time 3D display of surface mesh data representing structural parcellations and generation of user defined cut planes from volumetric atlases.

• Resource
• NIF
• 7 years ago - by Anonymous

Software tool as data and metadata repository of Extracellular RNA Communication Consortium. Atlas includes small RNA sequencing and qPCR derived exRNA profiles from human and mouse biofluids. All RNAseq datasets are processed using version 4 of exceRpt small RNAseq pipeline. Atlas accepts submissions for RNAseq or qPCR data.

• Resource
• SciCrunch
• 7 years ago - submitted by William Thistlethwaite

Software tool for genomic intervals querying and processing built on top of Apache Spark. Elastic, fast and scalable SQL oriented solution for processing and querying genomic intervals.

• Resource
• SciCrunch
• 7 years ago - by Anonymous

Software tool as probabilistic multi omics data matching procedure to curate data, identify and correct data annotation and errors in large databases. Used to check potential labeling errors in profiles where number of cis relationships is small, such as miRNA and RPPA profiles.

• Resource
• SciCrunch
• 7 years ago - submitted by Eunjee Lee

Software event based framework for processing and controlling data streams. Visual language designed for making software systems that require rich and rapid interaction with external world.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software program that controls instrument operation, data collection and analysis. Software for CytoFLEX Platform by Beckman Coulter.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Web server for RNA and DNA secondary structure prediction and analysis. Software package as RNA folding prediction program.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous