Curator Dashboard

Consortium to bring together clinicians, pathologists, researchers, and biotech innovators to create scalable network of stakeholders interested in helping patients with glomerular kidney disease. Makes collective expertise of its members available for discussion of individual cases, provides infrastructure for biomarker studies, enables genomic research, and facilitates clinical trials.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Software tool that combines steps of image processing, non rigid image registration, and spot localisation. Performs registration of 3D imaging data and localization of spots, active synapses in light microscopy images, in semi automatic mode with graphical user interface.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for accurate annotation and quantification of microRNAs and their isomiRs from small RNA-sequencing data. Provides information on quality of sequencing data, genome mapping statistics, abundance of other types of small RNAs such as tDRs and yDRs, prevalence of post transcriptional modifications.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software R package for performing graph theory analyses of brain MRI data.

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• NIF
• 7 years ago - by Anonymous

Open source software tool to provide template for command line bioinformatics tools in various programming languages. Program reads one or more input FASTA files, computes variety of statistics on each file, and prints tabulated output. Used as basis for learning and as foundation for starting new projects.

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• SciCrunch
• 7 years ago - by Anonymous

Software platform used for production of animations, rich Internet applications, desktop applications, mobile applications, mobile games and embedded web browser video players. Adobe will stop updating and distributing Flash Player in 2020. For existing Flash content, eventual, final version of Flash plug-in will still work after 2020, and Adobe will work with browser makers to ensure security vulnerabilities are patched.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software R package for analysis of single cell RNA-seq expression, normalization and differential expression data. Provides framework to perform cell and gene filtering, quality control, normalization, dimension reduction, clustering, differential expression, and visualization functions.

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• SciCrunch
• 7 years ago - submitted by Joseph powell

Software tool for folding RNA secondary structures, including two limited classes of pseudoknots. Performs abstract shape analysis for structures holding pseudoknots up to complexity of kissing hairpin motifs. Successor of pknotsRG. Used for secondary structure prediction including kissing hairpin motifs.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software validation tool that checks submitted folder structure for compliance to BIDS data standard. Validates Brain Imaging Data Structure.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software tool as stochastic algorithm for estimating maximum likelihood phylogenies. Used for phylogenomic inference.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web server for RNA secondary structure prediction. Predicts RNA secondary structure from RNA sequence. Based on generalized centroid estimator.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for pairwise sequence alignment. Identifies local similarities in two input sequences. One of EMBL-EBI search and sequence analysis tools.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to analyze real-time PCR data and run PCR system in software controlled mode., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 7 years ago - submitted by Timothy Errington

Software Python tool as viewer for MRI data and numpy arrays.

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• NIF
• 7 years ago - by Anonymous

Software tool as support for working with light and electron microscopy fly brain data. Part of suite of R packages based on NeuroAnatomy Toolbox. Provides tools to move between adult brain EM and light level data, emphasising interaction between CATMAID web application and R Neuroanatomy Toolbox package.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software R package for 3D visualisation and analysis of biological image data, especially tracings of single neurons.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software R package as single cell regulatory network inference and clustering. Used for simultaneous gene regulatory network reconstruction and cell state identification from single cell RNA-seq data.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Platform for Secure Access to Research Data and E-Infrastructure based on European Standards for Health Case information. Used for secure processing of sensitive personal data in research in health and care sector.

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• SciCrunch
• 7 years ago - by Anonymous

Software R package for inference of cell fate bias from single cell RNA-seq data. Iterative supervised learning algorithm for probabilistic quantification of cell fate bias in progenitor populations.

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• RRID-Legacy
• 7 years ago - by Anonymous

Algorithm for derivation of cell lineage trees based on RaceID2 results and predicts multipotent cell identites. StemID2 is algorithm for identification of lineage trees based on RaceID3 analysis. Used for better understanding of differentiation dynamics in variety of systems. Written in R computing language.

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• RRID-Legacy
• 7 years ago - by Anonymous