Curator Dashboard

Software tool as objective method for quantifying qRT-PCR results using calculations based on kinetics of individual PCR reactions without need of standard curve, independent of any assumptions or subjective judgments which allow direct calculation of efficiency and CT. Algorithm provides objective and noise-resistant method for quantification of qRT-PCR results that is independent of specific equipment used to perform PCR reactions.

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• RRID-Legacy
• 6 years ago - by Anonymous

Database to facilitate genomic and genetic data distribution, analysis, mining and integration for cucurbits. To store, mine, analyze, integrate and disseminate Cucurbitaceae family datasets and to provide central portal for cucurbit research and breeding community. Central portal for comparative and functional genomics of cucurbit crops.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as free color blindness simulator for Windows, Mac and Linux. Design for Color Impaired. Takes guesswork out of designing for color blindness by showing you in real time what people with common color vision impairments will see.Color Oracle is open source, available on GitHub for Mac and Windows/Java.

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• RRID-Legacy
• 6 years ago - submitted by Tracey Weissgerber

Electrophysiology patch clamp amplifier for collecting electrical signals from tissues and cells. Can be controlled via USB. Designed and manufactured by HEKA Elektronik.

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• RRID-Legacy
• 6 years ago - submitted by Benjamin Owen

Web tool to visualise protein sequences as helices. Draws helical wheel diagram for protein sequence. EMBOSS pepwheel displays peptide sequences in helical representation.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool to perform label free quantification from shotgun proteomics experiments. Operates as node within Proteome Discoverer workflow environment. Makes use of multi core processors and can process data in parallel threads to speed up data analysis. Provides features such as retention time alignment and peptide identity propagation and more.

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• RRID-Legacy
• 6 years ago - submitted by Juraj Ahel

Software scoring system to identify peptides out of tandem mass spectrometry data using database of known proteins. Universal identification algorithm optimized for high resolution and high accuracy tandem mass spectra. Software tool as peptide and protein identification algorithm developed by Bioinformatics Research Group University of Applied Sciences Upper Austria in close cooperation with group of Karl Mechtler at IMP Vienna, Austria.

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• RRID-Legacy
• 6 years ago - submitted by Juraj Ahel

Software and algorithm for analyzing protein protein cross linking mass spectrometry data. Library of routines for peptide based mass spectrometry. Contains search engine for identification of crosslinked peptides.

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• RRID-Legacy
• 6 years ago - submitted by Juraj Ahel

Software for visualization of macromolecular structures, atomic coordinates, and 3D intensity maps, and for building macromolecular structures.

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• RRID-Legacy
• 6 years ago - submitted by Juraj Ahel

Web tool for predicting deleteriousness of variants throughout human genome. Software tool for scoring deleteriousness of single nucleotide variants as well as insertion and deletions variants in human genome.

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• RRID-Legacy
• 6 years ago - submitted by Juraj Ahel

Software package for automatic particle picking for cryo-EM using neural networks. Particle picker for electron cryomicroscopy based on deep learning object detection system You Only Look Once YOLO. Distributed as part of image processing workflow in SPHIRE.

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• RRID-Legacy
• 6 years ago - submitted by Juraj Ahel

Software suite for access to cryo electron microscopy with goal of quality assessment and result reproducibility by statistical resampling. Cryo-EM processing software. Major programs within SPHIRE include Movie, Window, crYOLO, ISAC, VIPER, Meridien, Sort3D, LocalRes, Cinderella.

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• RRID-Legacy
• 6 years ago - submitted by Juraj Ahel

Web tool to predict whether given protein sequence is intrinsically unfolded. Algorithm for predicting ordered and disordered regions in protein based on its primary structure amino acid sequence. Graphic web server to predict if given protein sequence is intrinsically unfolded implementing algorithm of Uversky and co-workers, which is based on average residue hydrophobicity and net charge of sequence.

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• RRID-Legacy
• 6 years ago - submitted by Juraj Ahel

A DNA polymerase for PCR amplification

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• RRID-Legacy
• 6 years ago - submitted by Alfredo Ulloa-Aguirre

Software tool that can match tandem mass spectra with peptide sequences, in process known as protein identification. Database search engine for matching tandem mass spectra with protein sequences. Command line tool for matching tandem mass spectra with peptide sequences.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as user interface for running Fly Liquid Food Interaction Counter experiments.

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• RRID-Legacy
• 6 years ago - by Anonymous

R Code used to analyze FLIC data. Functions are provided to examine interactions with food for single well and food choice experiments when fly makes physical contact with liquid food.

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• RRID-Legacy
• 6 years ago - by Anonymous

Text mining algorithm to screen biomedical publications to find data sharing statements. Algorithm that parses set of publications and detects which publications disseminated Open Data or Open Code together with publication. Tailored towards biomedical literature.

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• RRID-Legacy
• 6 years ago - by Anonymous

Portal for information about moderation of social science papers. Home for SocArXiv. Blog and information center. Site hosts announcements of news and developments related to archive, as well as essays that reflect views of listed authors.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Software toolkit for genome wide association studies optimized for GWAS like datasets by CSIRO. Machine learning framework that creates insights from high dimensional data, including genomics and clinical data.

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• SciCrunch
• 6 years ago - submitted by Natalie Twine