Curator Dashboard

Project to create complete mesoscale connectivity atlas of the C57Black/6 mouse brain and to subsequently generate its global neural networks.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Project to determine organization of neuronal connections between nervous system parts. Source for documented connections in rat brain.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Software tool for data analysis and scientific visualization by IONDEV SRL.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software application as image segmentation tool. Brain volumetry assessment software. Processes MRI scans and provides self explanatory patient report with total brain volume, hippocampal volume and volumetric data on key segments of brain measured against healthy database.

• Resource
• SciCrunch
• 7 years ago - submitted by Brainreader Brainreader

Developer of medical software to offer image analysis technologies. Company in Denmark that provides medical image processing software to get quantifiable and accurate insight into brain.

• Organization
• SciCrunch
• 7 years ago - submitted by Brainreader Brainreader

Software package for advanced Bayesian evolutionary analysis by sampling trees. Used for phylogenetics, population genetics and phylodynamics. Program for Bayesian phylogenetic analysis of molecular sequences. Estimates rooted, time measured phylogenies using strict or relaxed molecular clock models. Framework can be extended by third parties. Comprised of standalone programs including BEAUti, BEAST, MASTER, RBS, SNAPP, MultiTypeTree, BDSKY, LogAnalyser, LogCombiner, TreeAnnotator, DensiTree and package manager.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for investigating temporal signal and clocklikeness of molecular phylogenies. Used for visualization and analysis of temporally sampled sequence data to assess whether there is sufficient temporal signal in data to proceed with phylogenetic molecular clock analysis, and to identify sequences whose genetic divergence and sampling date are incongruent. Not available for downloading as of August 8, 2019.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software package as Bayesian method to infer migration from genetic data. Implemented in BEAST2 that combines accuracy of methods based on structured coalescent with computational efficiency required to handle more than few populations.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software R package for phylogenetic reconstruction and analysis. Used for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation. Allows to compare trees, models selection and offers visualizations for trees and split networks.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software R package to implement extensions to Freund and Schapire AdaBoost algorithm and Friedman gradient boosting machine. Includes regression methods for least squares, absolute loss, t distribution loss, quantile regression, logistic, multinomial logistic, Poisson, Cox proportional hazards partial likelihood, AdaBoost exponential loss, Huberized hinge loss, and Learning to Rank measures.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to identify and annotate homoplasies on phylogeny and sequence alignment. Used to automatically identify any homoplasies present in simulated and real phylogenetic data. Java application that can be used as standalone tool or within statistical programming environment R.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software R package for tree ensembles such as random forests, regularized random forests and gradient boosted trees. Provides functions for extracting, measuring and pruning rules, selecting compact rule set, summarizing rules into learner, calculating frequent variable interactions, formatting rules in latex code.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software tool used to conduct life table analysis focused on development of cohort or population for animal species with two sexes. Parent organization is National Chung Hsing University, Taichung, Taiwan.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for electron tomography and 3D image processing. Software package used in electron tomography for marker free alignment and 3D reconstruction of tilt series. Tomography software package distributed for linux operating system and developed by Hanspeter Winkler.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for fast tomographic reconstruction on multicore computers. Used for electron tomography studies with increasing resolution needs.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for statistical analysis by BellCurve that adds statistical analysis methods to Excel menu .

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for automated EM data acquisition. Used for efficient tilt series acquisition and interface for image capture, display, and storage and for control of some aspects of microscope function.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software package to post process MR spectroscopy data. Magnetic Resonance signal processing and analysis software. Runs under Matlab.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software package for densitometry measurements of electrophoresis gels by Silk Scientific Inc. Gel analysis software. Turns scanner into gel densitometer. Works with most image formats (TIFF, JPG, BMP, GIF, etc.) from any scanner, digital camera, or other image source. Can quantify Western blots, Agarose gels, PCR gels, TLC.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Collection of data about variants, genes, phenotypes and diseases involved in mitochondrial functionality. Users can search for variant position, gene, phenotype or disease and retrieve all related information through integrated network of biological entities.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Roberto Preste